Towards reproducible computational drug discovery

N Schaduangrat, S Lampa, S Simeon… - Journal of …, 2020 - Springer
The reproducibility of experiments has been a long standing impediment for further scientific
progress. Computational methods have been instrumental in drug discovery efforts owing to …

Virtual screening web servers: designing chemical probes and drug candidates in the cyberspace

N Singh, L Chaput, BO Villoutreix - Briefings in bioinformatics, 2021 - academic.oup.com
The interplay between life sciences and advancing technology drives a continuous cycle of
chemical data growth; these data are most often stored in open or partially open databases …

The use of machine learning modeling, virtual screening, molecular docking, and molecular dynamics simulations to identify potential VEGFR2 kinase inhibitors

A Salimi, JH Lim, JH Jang, JY Lee - Scientific Reports, 2022 - nature.com
Targeting the signaling pathway of the Vascular endothelial growth factor receptor-2 is a
promising approach that has drawn attention in the quest to develop novel anti-cancer drugs …

Identification of lead inhibitors for 3CLpro of SARS-CoV-2 target using machine learning based virtual screening, ADMET analysis, molecular docking and molecular …

SP Chhetri, VS Bhandari, R Maharjan… - RSC advances, 2024 - pubs.rsc.org
The SARS-CoV-2 3CLpro is a critical target for COVID-19 therapeutics due to its role in viral
replication. We employed a screening pipeline to identify novel inhibitors by combining …

[HTML][HTML] In silico study of traditional Chinese medicinal compounds targeting alzheimer's disease amyloid beta-peptide (1–42)

VN Kumar, T Tamilanban, TS Sultana, K Manasa… - Chemical Physics …, 2023 - Elsevier
The objective of this study is to recognize the potential traditional Chinese medicinal
compound by virtual screening and docking analysis for the amyloid-beta disaggregation …

QSAR-based virtual screening of natural products database for identification of potent antimalarial hits

LT Ferreira, JVB Borba, JT Moreira-Filho, A Rimoldi… - Biomolecules, 2021 - mdpi.com
With about 400,000 annual deaths worldwide, malaria remains a public health burden in
tropical and subtropical areas, especially in low-income countries. Selection of drug …

An integrated computational approach towards novel drugs discovery against polyketide synthase 13 thioesterase domain of Mycobacterium tuberculosis

A Altharawi, MA Alossaimi, MM Alanazi… - Scientific Reports, 2023 - nature.com
The acquired drug resistance by Mycobacterium tuberculosis (M. tuberculosis) to antibiotics
urges the need for developing novel anti-M. tuberculosis drugs that possess novel …

Computer-aided drug design project for introductory high school students

EW Kelley - Journal of Chemical Education, 2023 - ACS Publications
The pharmaceutical industry has been a major player in improving life expectancies and
driving chemistry employment. While computational chemistry tools increasingly guide …

Python in chemistry: physicochemical tools

FV Ryzhkov, YE Ryzhkova, MN Elinson - Processes, 2023 - mdpi.com
The popularity of the Python programming language in chemistry is growing every year.
Python provides versatility, simplicity, and a rich ecosystem of libraries, making it the …

Introduction to artificial intelligence and deep learning using interactive electronic programming notebooks

J Menke, S Homberg, O Koch - Archiv der Pharmazie, 2023 - Wiley Online Library
Artificial intelligence (AI), or deep learning (DL), approaches have already found their way
into our everyday lives. Furthermore, these methods are a central part of research in the life …