Less label, more free: approaches in label‐free quantitative mass spectrometry

KA Neilson, NA Ali, S Muralidharan, M Mirzaei… - …, 2011 - Wiley Online Library
In this review we examine techniques, software, and statistical analyses used in label‐free
quantitative proteomics studies for area under the curve and spectral counting approaches …

[PDF][PDF] Integrative physiology of fasting

SM Secor, HV Carey - Compr Physiol, 2016 - researchgate.net
Extended bouts of fasting are ingrained in the ecology of many organisms, characterizing
aspects of reproduction, development, hibernation, estivation, migration, and infrequent …

Hibernation in black bears: independence of metabolic suppression from body temperature

Ø Tøien, J Blake, DM Edgar, DA Grahn, HC Heller… - Science, 2011 - science.org
Black bears hibernate for 5 to 7 months a year and, during this time, do not eat, drink,
urinate, or defecate. We measured metabolic rate and body temperature in hibernating black …

Metabolic rate depression: the biochemistry of mammalian hibernation

KB Storey, JM Storey - Advances in clinical chemistry, 2010 - books.google.com
During winter hibernation, small mammals fall into long periods of deep cold torpor where
metabolic rate is suppressed by> 90% and core body temperature can fall to near 0 C …

Deep longitudinal multiomics profiling reveals two biological seasonal patterns in California

MR Sailani, AA Metwally, W Zhou, SMSF Rose… - Nature …, 2020 - nature.com
The influence of seasons on biological processes is poorly understood. In order to identify
biological seasonal patterns based on diverse molecular data, rather than calendar dates …

Modulation of gene expression in heart and liver of hibernating black bears (Ursus americanus)

VB Fedorov, AV Goropashnaya, Ø Tøien, NC Stewart… - BMC genomics, 2011 - Springer
Background Hibernation is an adaptive strategy to survive in highly seasonal or
unpredictable environments. The molecular and genetic basis of hibernation physiology in …

iTRAQ-based quantitative proteomic analysis of Takifugu fasciatus liver in response to low-temperature stress

X Wen, X Zhang, Y Hu, J Xu, T Wang, S Yin - Journal of proteomics, 2019 - Elsevier
Low temperatures profoundly influence the physiological and behavioural processes of
ectotherms, especially teleosts, which have made them the subjects of strong interest over …

Maternal nutrition modulates fetal development by inducing placental efficiency changes in gilts

L Che, ZG Yang, MM Xu, SY Xu, LQ Che, Y Lin… - BMC genomics, 2017 - Springer
Background Intra-uterine growth restriction (IUGR) and fetal overgrowth increase risks to
postnatal health. Maternal nutrition is the major intrauterine environmental factor that alters …

Examining the practical limits of batch effect-correction algorithms: When should you care about batch effects?

L Zhou, ACH Sue, WWB Goh - Journal of genetics and genomics, 2019 - Elsevier
Batch effects are technical sources of variation and can confound analysis. While many
performance ranking exercises have been conducted to establish the best batch effect …

Global protein conjugation by ubiquitin-like-modifiers during ischemic stress is regulated by microRNAs and confers robust tolerance to ischemia

Y Lee, KR Johnson, JM Hallenbeck - 2012 - journals.plos.org
Hibernation torpor provides an excellent model of natural tolerance to ischemia. We have
previously shown that massive global SUMOylation occurs during hibernation torpor in …