Vanadium and proteins: Uptake, transport, structure, activity and function

JC Pessoa, E Garribba, MFA Santos… - Coordination chemistry …, 2015 - Elsevier
Vanadium is an element ubiquitously present in our planet's crust and thus there are several
organisms that use vanadium for activity or function of proteins. Examples are the vanadium …

Cre recombinase and other tyrosine recombinases

G Meinke, A Bohm, J Hauber, MT Pisabarro… - Chemical …, 2016 - ACS Publications
Tyrosine-type site-specific recombinases (T-SSRs) have opened new avenues for the
predictable modification of genomes as they enable precise genome editing in heterologous …

Large language models improve annotation of prokaryotic viral proteins

ZN Flamholz, SJ Biller, L Kelly - Nature Microbiology, 2024 - nature.com
Viral genomes are poorly annotated in metagenomic samples, representing an obstacle to
understanding viral diversity and function. Current annotation approaches rely on alignment …

Cre recombinase

GD Van Duyne - Mobile DNA III, 2015 - Wiley Online Library
The use of Cre recombinase to carry out conditional mutagenesis of transgenes and insert
DNA cassettes into eukaryotic chromosomes is widespread (1–9). Indeed, a PubMed search …

Mechanisms of DNA transposition

AB Hickman, F Dyda - Mobile DNA III, 2015 - Wiley Online Library
In this chapter, we provide an overview of the fundamental concepts of DNA transposition
mechanisms. Our aim is to emphasize basic themes and, in this effort, we will focus on …

Small-molecule control of protein function through Staudinger reduction

J Luo, Q Liu, K Morihiro, A Deiters - Nature chemistry, 2016 - nature.com
Using small molecules to control the function of proteins in live cells with complete specificity
is highly desirable, but challenging. Here we report a small-molecule switch that can be …

[HTML][HTML] Dynamics in Cre-loxP site-specific recombination

MP Foster, MJ Benedek, TD Billings… - Current opinion in …, 2024 - Elsevier
Cre recombinase is a phage-derived enzyme that has found utility for precise manipulation
of DNA sequences. Cre recognizes and recombines pairs of loxP sequences characterized …

Starships are active eukaryotic transposable elements mobilized by a new family of tyrosine recombinases

AS Urquhart, AA Vogan… - Proceedings of the …, 2023 - National Acad Sciences
Transposable elements in eukaryotic organisms have historically been considered “selfish,”
at best conferring indirect benefits to their host organisms. The Starships are a recently …

Light-inducible recombinases for bacterial optogenetics

MB Sheets, WW Wong, MJ Dunlop - ACS Synthetic Biology, 2020 - ACS Publications
Optogenetic tools can provide direct and programmable control of gene expression. Light-
inducible recombinases, in particular, offer a powerful method for achieving precise …

Engineering small molecule switches of protein function in zebrafish embryos

W Brown, J Wesalo, M Tsang… - Journal of the American …, 2023 - ACS Publications
Precise temporally regulated protein function directs the highly complex processes that
make up embryo development. The zebrafish embryo is an excellent model organism to …