Mass spectrometry-based protein footprinting for higher-order structure analysis: fundamentals and applications

XR Liu, MM Zhang, ML Gross - Chemical reviews, 2020 - ACS Publications
Proteins adopt different higher-order structures (HOS) to enable their unique biological
functions. Understanding the complexities of protein higher-order structures and dynamics …

Probing protein structure by amino acid‐specific covalent labeling and mass spectrometry

VL Mendoza, RW Vachet - Mass spectrometry reviews, 2009 - Wiley Online Library
For many years, amino acid‐specific covalent labeling has been a valuable tool to study
protein structure and protein interactions, especially for systems that are difficult to study by …

[图书][B] Chemical reagents for protein modification

RL Lundblad - 2004 - taylorfrancis.com
Revised and updated, Chemical Reagents for Protein Modification, Third Edition is an
encyclopedic work describing the many approaches to the site-specific modification of …

KAS-seq: genome-wide sequencing of single-stranded DNA by N3-kethoxal–assisted labeling

R Lyu, T Wu, AC Zhu, DC West-Szymanski, X Weng… - Nature protocols, 2022 - nature.com
Transcription and its dynamics are crucial for gene expression regulation. However, very few
methods can directly read out transcriptional activity with low-input material and high …

Elucidating the higher‐order structure of biopolymers by structural probing and mass spectrometry: MS3D

D Fabris, ET Yu - Journal of mass spectrometry, 2010 - Wiley Online Library
Chemical probing represents a very versatile alternative for studying the structure and
dynamics of substrates that are intractable by established high‐resolution techniques. The …

Toward building a database of bifunctional probes for the MS3D investigation of nucleic acids structures

Q Zhang, ET Yu, KA Kellersberger, E Crosland… - Journal of the American …, 2006 - Springer
This report illustrates the approaches employed to investigate critical aspects of the activity
of crosslinking reagents toward nucleic acid substrates, which should be evaluated to …

Use of chemical modification and mass spectrometry to identify substrate-contacting sites in proteinaceous RNase P, a tRNA processing enzyme

TH Chen, A Tanimoto, N Shkriabai… - Nucleic acids …, 2016 - academic.oup.com
Among all enzymes in nature, RNase P is unique in that it can use either an RNA-or a
protein-based active site for its function: catalyzing cleavage of the 5′-leader from …

Nested Arg-specific bifunctional crosslinkers for MS-based structural analysis of proteins and protein assemblies

Q Zhang, E Crosland, D Fabris - Analytica chimica acta, 2008 - Elsevier
The combination of chemical probing and high-resolution mass spectrometry constitutes a
powerful alternative for the structural elucidation of biomolecules possessing unfavorable …

Evaluation of chemical labeling methods for identifying functional arginine residues of proteins by mass spectrometry

MSK Wanigasekara, SM Chowdhury - Analytica chimica acta, 2016 - Elsevier
Arginine residues undergo several kinds of post-translational modifications (PTMs). These
PTMs are associated with several inflammatory diseases, such as rheumatoid arthritis …

[图书][B] Chemical modification of biological polymers

RL Lundblad - 2011 - books.google.com
Examining the chemical modification of biological polymers and the emerging applications
of this technology, Chemical Modification of Biological Polymers reflects the change in …