Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Structure and dynamics of core/periphery networks

P Csermely, A London, LY Wu… - Journal of Complex …, 2013 - academic.oup.com
Recent studies uncovered important core/periphery network structures characterizing
complex sets of cooperative and competitive interactions between network nodes, be they …

Regional protein expression in human Alzheimer's brain correlates with disease severity

J Xu, S Patassini, N Rustogi, I Riba-Garcia… - Communications …, 2019 - nature.com
Alzheimer's disease (AD) is a progressive neurodegenerative disorder that currently affects
36 million people worldwide with no effective treatment available. Development of AD …

Trait correlation network analysis identifies biomass allocation traits and stem specific length as hub traits in herbaceous perennial plants

M Kleyer, J Trinogga, MA Cebrián‐Piqueras… - Journal of …, 2019 - Wiley Online Library
Correlations among plant traits often reflect important trade‐offs or allometric relationships in
biological functions like carbon gain, support, water uptake, and reproduction that are …

Integrated biophysical modeling of the SARS-CoV-2 spike protein binding and allosteric interactions with antibodies

GM Verkhivker, L Di Paola - The Journal of Physical Chemistry B, 2021 - ACS Publications
Structural and biochemical studies of the severe acute respiratory syndrome (SARS)-CoV-2
spike glycoproteins and complexes with highly potent antibodies have revealed multiple …

Molecular simulations and network modeling reveal an allosteric signaling in the SARS-CoV-2 spike proteins

GM Verkhivker - Journal of proteome research, 2020 - ACS Publications
The development of computational strategies for the quantitative characterization of the
functional mechanisms of SARS-CoV-2 spike proteins is of paramount importance in efforts …

Dynamic network modeling of allosteric interactions and communication pathways in the SARS-CoV-2 spike trimer mutants: Differential modulation of conformational …

GM Verkhivker, L Di Paola - The Journal of Physical Chemistry B, 2021 - ACS Publications
The rapidly growing body of structural and biochemical studies of the SARS-CoV-2 spike
glycoprotein has revealed a variety of distinct functional states with radically different …

The differential role of central and bridge symptoms in deactivating psychopathological networks

D Castro, F Ferreira, I de Castro, AR Rodrigues… - Frontiers in …, 2019 - frontiersin.org
The network model of psychopathology suggests that central and bridge symptoms
represent promising treatment targets because they may accelerate the deactivation of the …

Let-7e modulates the inflammatory response in vascular endothelial cells through ceRNA crosstalk

Z Lin, J Ge, Z Wang, J Ren, X Wang, H Xiong, J Gao… - Scientific reports, 2017 - nature.com
The inflammatory responses of vascular endothelial cells (VECs) are critical in the
development of many cardio-cerebrovascular diseases. Let-7e is an important regulator of …

[HTML][HTML] Quantitative network mapping of the human kinome interactome reveals new clues for rational kinase inhibitor discovery and individualized cancer therapy

F Cheng, P Jia, Q Wang, Z Zhao - Oncotarget, 2014 - ncbi.nlm.nih.gov
The human kinome is gaining importance through its promising cancer therapeutic targets,
yet no general model to address the kinase inhibitor resistance has emerged. Here, we …