CDK9 keeps RNA polymerase II on track

S Egloff - Cellular and Molecular Life Sciences, 2021 - Springer
Abstract Cyclin-dependent kinase 9 (CDK9), the kinase component of positive transcription
elongation factor b (P-TEFb), is essential for transcription of most protein-coding genes by …

Transcriptional interference at tandem lncRNA and protein-coding genes: an emerging theme in regulation of cellular nutrient homeostasis

S Shuman - Nucleic acids research, 2020 - academic.oup.com
Tandem transcription interference occurs when the act of transcription from an upstream
promoter suppresses utilization of a co-oriented downstream promoter. Because eukaryal …

Control of RNA Pol II speed by PNUTS-PP1 and Spt5 dephosphorylation facilitates termination by a “sitting duck torpedo” mechanism

MA Cortazar, RM Sheridan, B Erickson, N Fong… - Molecular cell, 2019 - cell.com
Control of transcription speed, which influences many co-transcriptional processes, is poorly
understood. We report that PNUTS-PP1 phosphatase is a negative regulator of RNA …

The affinity of the S9. 6 antibody for double-stranded RNAs impacts the accurate mapping of R-loops in fission yeast

SR Hartono, A Malapert, P Legros, P Bernard… - Journal of molecular …, 2018 - Elsevier
R-loops, which result from the formation of stable DNA: RNA hybrids, can both threaten
genome integrity and act as physiological regulators of gene expression and chromatin …

A Cdk9–PP1 switch regulates the elongation–termination transition of RNA polymerase II

PK Parua, GT Booth, M Sansó, B Benjamin, JC Tanny… - Nature, 2018 - nature.com
The end of the RNA polymerase II (Pol II) transcription cycle is strictly regulated to prevent
interference between neighbouring genes and to safeguard transcriptome integrity. The …

P-TEFb regulation of transcription termination factor Xrn2 revealed by a chemical genetic screen for Cdk9 substrates

M Sansó, RS Levin, JJ Lipp, VYF Wang… - Genes & …, 2016 - genesdev.cshlp.org
The transcription cycle of RNA polymerase II (Pol II) is regulated at discrete transition points
by cyclin-dependent kinases (CDKs). Positive transcription elongation factor b (P-TEFb), a …

Elongation/termination factor exchange mediated by PP1 phosphatase orchestrates transcription termination

T Kecman, K Kuś, DH Heo, K Duckett, A Birot… - Cell reports, 2018 - cell.com
Termination of RNA polymerase II (Pol II) transcription is a key step that is important for 3′
end formation of functional mRNA, mRNA release, and Pol II recycling. Even so, the …

Transcription of mammalian cis-regulatory elements is restrained by actively enforced early termination

LMI Austenaa, I Barozzi, M Simonatto, S Masella… - Molecular cell, 2015 - cell.com
Upon recruitment to active enhancers and promoters, RNA polymerase II (Pol II) generates
short non-coding transcripts of unclear function. The mechanisms that control the length and …

Distinct Cdk9-phosphatase switches act at the beginning and end of elongation by RNA polymerase II

PK Parua, S Kalan, B Benjamin, M Sansó… - Nature …, 2020 - nature.com
Reversible phosphorylation of Pol II and accessory factors helps order the transcription
cycle. Here, we define two kinase-phosphatase switches that operate at different points in …

Protein phosphatases in the RNAPII transcription cycle: erasers, sculptors, gatekeepers, and potential drug targets

G Cossa, PK Parua, M Eilers… - Genes & Development, 2021 - genesdev.cshlp.org
The transcription cycle of RNA polymerase II (RNAPII) is governed at multiple points by
opposing actions of cyclin-dependent kinases (CDKs) and protein phosphatases, in a …