Applying high-dimensional single-cell technologies to the analysis of cancer immunotherapy

SH Gohil, JB Iorgulescu, DA Braun, DB Keskin… - Nature Reviews …, 2021 - nature.com
Advances in molecular biology, microfluidics and bioinformatics have empowered the study
of thousands or even millions of individual cells from malignant tumours at the single-cell …

Single-cell profiling of myeloid cells in glioblastoma across species and disease stage reveals macrophage competition and specialization

AR Pombo Antunes, I Scheyltjens, F Lodi… - Nature …, 2021 - nature.com
Glioblastomas are aggressive primary brain cancers that recur as therapy-resistant tumors.
Myeloid cells control glioblastoma malignancy, but their dynamics during disease …

Next-generation pathology using multiplexed immunohistochemistry: mapping tissue architecture at single-cell level

FM Bosisio, Y Van Herck, J Messiaen… - Frontiers in …, 2022 - frontiersin.org
Single-cell omics aim at charting the different types and properties of all cells in the human
body in health and disease. Over the past years, myriads of cellular phenotypes have been …

A cellular hierarchy in melanoma uncouples growth and metastasis

P Karras, I Bordeu, J Pozniak, A Nowosad, C Pazzi… - Nature, 2022 - nature.com
Although melanoma is notorious for its high degree of heterogeneity and plasticity,, the
origin and magnitude of cell-state diversity remains poorly understood. Equally, it is unclear …

A pan-cancer blueprint of the heterogeneous tumor microenvironment revealed by single-cell profiling

J Qian, S Olbrecht, B Boeckx, H Vos, D Laoui… - Cell research, 2020 - nature.com
The stromal compartment of the tumor microenvironment consists of a heterogeneous set of
tissue-resident and tumor-infiltrating cells, which are profoundly moulded by cancer cells. An …

Monocyte-driven atypical cytokine storm and aberrant neutrophil activation as key mediators of COVID-19 disease severity

L Vanderbeke, P Van Mol, Y Van Herck… - Nature …, 2021 - nature.com
Epidemiological and clinical reports indicate that SARS-CoV-2 virulence hinges upon the
triggering of an aberrant host immune response, more so than on direct virus-induced …

The spatial landscape of progression and immunoediting in primary melanoma at single-cell resolution

AJ Nirmal, Z Maliga, T Vallius, B Quattrochi, AA Chen… - Cancer Discovery, 2022 - AACR
Cutaneous melanoma is a highly immunogenic malignancy that is surgically curable at early
stages but life-threatening when metastatic. Here we integrate high-plex imaging, 3D high …

Multiomics and spatial mapping characterizes human CD8+ T cell states in cancer

S Naulaerts, A Datsi, DM Borras… - Science Translational …, 2023 - science.org
Clinically relevant immunological biomarkers that discriminate between diverse
hypofunctional states of tumor-associated CD8+ T cells remain disputed. Using multiomics …

Transcriptional and spatial profiling of the kidney allograft unravels a central role for FcyRIII+ innate immune cells in rejection

B Lamarthée, J Callemeyn, Y Van Herck… - Nature …, 2023 - nature.com
Rejection remains the main cause of premature graft loss after kidney transplantation,
despite the use of potent immunosuppression. This highlights the need to better understand …

[HTML][HTML] A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma

J Pozniak, D Pedri, E Landeloos, Y Van Herck… - Cell, 2024 - cell.com
To better understand intrinsic resistance to immune checkpoint blockade (ICB), we
established a comprehensive view of the cellular architecture of the treatment-naive …