Structural and non-coding variants increase the diagnostic yield of clinical whole genome sequencing for rare diseases

AT Pagnamenta, C Camps, E Giacopuzzi, JM Taylor… - Genome medicine, 2023 - Springer
Background Whole genome sequencing is increasingly being used for the diagnosis of
patients with rare diseases. However, the diagnostic yields of many studies, particularly …

Specialist multidisciplinary input maximises rare disease diagnoses from whole genome sequencing

WL Macken, M Falabella, C McKittrick… - Nature …, 2022 - nature.com
Diagnostic whole genome sequencing (WGS) is increasingly used in rare diseases.
However, standard, semi-automated WGS analysis may overlook diagnoses in complex …

A systematic analysis of splicing variants identifies new diagnoses in the 100,000 Genomes Project

AJM Blakes, HA Wai, I Davies, HE Moledina, A Ruiz… - Genome Medicine, 2022 - Springer
Background Genomic variants which disrupt splicing are a major cause of rare genetic
diseases. However, variants which lie outside of the canonical splice sites are difficult to …

[HTML][HTML] A Comparison of Structural Variant Calling from Short-Read and Nanopore-Based Whole-Genome Sequencing Using Optical Genome Mapping as a …

Y Pei, M Tanguy, A Giess, A Dixit, LC Wilson… - Genes, 2024 - mdpi.com
The identification of structural variants (SVs) in genomic data represents an ongoing
challenge because of difficulties in reliable SV calling leading to reduced sensitivity and …

Genetic diagnostic yield in an 11-year cohort of craniosynostosis patients

L Gaillard, A Goverde, MJA Weerts, A de Klein… - European Journal of …, 2023 - Elsevier
Craniosynostosis may present in isolation,'non-syndromic', or with additional congenital
anomalies/neurodevelopmental disorders,'syndromic'. Clinical focus shifted from confirming …

Review of recurrently mutated genes in craniosynostosis supports expansion of diagnostic gene panels

RS Tooze, E Calpena, A Weber, LC Wilson, SRF Twigg… - Genes, 2023 - mdpi.com
Craniosynostosis, the premature fusion of the cranial sutures, affects~ 1 in 2000 children.
Although many patients with a genetically determined cause harbor a variant in one of just …

Conclusion of diagnostic odysseys due to inversions disrupting GLI3 and FBN1

AT Pagnamenta, J Yu, J Evans, P Twiss… - Journal of Medical …, 2023 - jmg.bmj.com
Many genetic testing methodologies are biased towards picking up structural variants (SVs)
that alter copy number. Copy-neutral rearrangements such as inversions are therefore likely …

The impact of inversions across 33,924 families with rare disease from a national genome sequencing project

AT Pagnamenta, J Yu, S Walker, AJ Noble… - The American Journal of …, 2024 - cell.com
Detection of structural variants (SVs) is currently biased toward those that alter copy number.
The relative contribution of inversions toward genetic disease is unclear. In this study, we …

A Palindrome‐Like Structure on 16p13.3 Is Associated with the Formation of Complex Structural Variations and SRRM2 Haploinsufficiency

AT Pagnamenta, J Yu, TA Willis, M Hashim… - Human …, 2023 - Wiley Online Library
SRRM2 encodes a splicing factor recently implicated in developmental disorders due to a
statistical enrichment of de novo mutations. Using data from the 100,000 Genomes Project …

An additional whole-exome sequencing study in 102 panel-undiagnosed patients: A retrospective study in a Chinese craniosynostosis cohort

J Chen, P Zhang, M Peng, B Liu, X Wang, S Du… - Frontiers in …, 2022 - frontiersin.org
Craniosynostosis (CRS) is a disease with prematurely fused cranial sutures. In the last
decade, the whole-exome sequencing (WES) was widely used in Caucasian populations …