Brian 2, an intuitive and efficient neural simulator

M Stimberg, R Brette, DFM Goodman - elife, 2019 - elifesciences.org
Brian 2 allows scientists to simply and efficiently simulate spiking neural network models.
These models can feature novel dynamical equations, their interactions with the …

The impact of Hodgkin–Huxley models on dendritic research

KE Petousakis, AA Apostolopoulou… - The Journal of …, 2023 - Wiley Online Library
For the past seven decades, the Hodgkin–Huxley (HH) formalism has been an invaluable
tool in the arsenal of neuroscientists, allowing for robust and reproducible modelling of ionic …

Training deep neural density estimators to identify mechanistic models of neural dynamics

PJ Gonçalves, JM Lueckmann, M Deistler… - Elife, 2020 - elifesciences.org
Mechanistic modeling in neuroscience aims to explain observed phenomena in terms of
underlying causes. However, determining which model parameters agree with complex and …

Degeneracy in hippocampal physiology and plasticity

RK Rathour, R Narayanan - Hippocampus, 2019 - Wiley Online Library
Degeneracy, defined as the ability of structurally disparate elements to perform analogous
function, has largely been assessed from the perspective of maintaining robustness of …

Neurodynamics

S Coombes, KCA Wedgwood - Texts in applied mathematics, 2023 - Springer
This is a book about 'Neurodynamics'. What we mean is that this is a book about how ideas
from dynamical systems theory have been developed and employed in recent years to give …

Dendritic integration of sensory evidence in perceptual decision-making

LN Groschner, LCW Hak, R Bogacz, S DasGupta… - Cell, 2018 - cell.com
Perceptual decisions require the accumulation of sensory information to a response
criterion. Most accounts of how the brain performs this process of temporal integration have …

[HTML][HTML] Homeostasis, failure of homeostasis and degenerate ion channel regulation

T O'Leary - Current Opinion in Physiology, 2018 - Elsevier
Highlights•Neurons express degenerate sets of ion channels that overlap functionally.•
Coregulation of degenerate channels enables circuit properties to be tightly tuned without …

Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses

WAM Wybo, J Jordan, B Ellenberger, U Marti Mengual… - Elife, 2021 - elifesciences.org
Dendrites shape information flow in neurons. Yet, there is little consensus on the level of
spatial complexity at which they operate. Through carefully chosen parameter fits, solvable …

Reconstruction of the hippocampus

A Romani, F Schürmann, H Markram… - … Modelling of the Brain …, 2022 - Springer
The hippocampus is a widely studied brain region thought to play an important role in higher
cognitive functions such as learning, memory, and navigation. The amount of data on this …

An in vitro whole-cell electrophysiology dataset of human cortical neurons

D Howard, HM Chameh, A Guet-McCreight… - …, 2022 - academic.oup.com
Background Whole-cell patch-clamp electrophysiology is an essential technique for
understanding how single neurons translate their diverse inputs into a functional output. The …