The microbial ecology of Escherichia coli in the vertebrate gut
E Foster-Nyarko, MJ Pallen - FEMS microbiology reviews, 2022 - academic.oup.com
Escherichia coli has a rich history as biology's 'rock star', driving advances across many
fields. In the wild, E. coli resides innocuously in the gut of humans and animals but is also a …
fields. In the wild, E. coli resides innocuously in the gut of humans and animals but is also a …
Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture
Background: The chicken is the most abundant food animal in the world. However, despite
its importance, the chicken gut microbiome remains largely undefined. Here, we exploit …
its importance, the chicken gut microbiome remains largely undefined. Here, we exploit …
Whole-genome sequencing and virulome analysis of Escherichia coli isolated from New Zealand environments of contrasting observed land use
Generic Escherichia coli is commonly used as an indicator of fecal contamination to assess
water quality and human health risk. Where measured E. coli exceedances occur, the …
water quality and human health risk. Where measured E. coli exceedances occur, the …
Prevalence and characterization of antibiotic resistance genes and integrons in Escherichia coli isolates from captive non-human primates of 13 zoos in China
Z Zhu, S Jiang, M Qi, H Liu, S Zhang, H Liu… - Science of The Total …, 2021 - Elsevier
Antimicrobial resistance (AMR) has become a public health concern; but antibiotic
resistance genes (ARGs) and integrons that link to AMR of Escherichia coli from non-human …
resistance genes (ARGs) and integrons that link to AMR of Escherichia coli from non-human …
Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia
Chickens and guinea fowl are commonly reared in Gambian homes as affordable sources of
protein. Using standard microbiological techniques, we obtained 68 caecal isolates of …
protein. Using standard microbiological techniques, we obtained 68 caecal isolates of …
Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana
Objectives Comprehensive data on the genomic epidemiology of hospital-associated
Klebsiella pneumoniae in Ghana are scarce. This study investigated the genomic diversity …
Klebsiella pneumoniae in Ghana are scarce. This study investigated the genomic diversity …
Remarkable genomic diversity among Escherichia isolates recovered from healthy chickens
The genus Escherichia has been extensively studied and it is known to encompass a range
of commensal and pathogenic bacteria that primarily inhabit the gastrointestinal tracts of …
of commensal and pathogenic bacteria that primarily inhabit the gastrointestinal tracts of …
The predominant lactic acid bacteria and yeasts involved in the spontaneous fermentation of millet during the production of the traditional porridge Hausa koko in …
Spontaneous fermentation of cereals like millet involves a diverse population of microbes
from various sources, including raw materials, processing equipment, fermenting …
from various sources, including raw materials, processing equipment, fermenting …
Genomic diversity of Escherichia coli from healthy children in rural Gambia
E Foster-Nyarko, NF Alikhan, UN Ikumapayi, G Sarwar… - PeerJ, 2021 - peerj.com
Little is known about the genomic diversity of Escherichia coli in healthy children from sub-
Saharan Africa, even though this is pertinent to understanding bacterial evolution and …
Saharan Africa, even though this is pertinent to understanding bacterial evolution and …
[HTML][HTML] Genomic analysis of Elizabethkingia species from aquatic environments: Evidence for potential clinical transmission
Elizabethkingia species are ubiquitous in aquatic environments, colonize water systems in
healthcare settings and are emerging opportunistic pathogens with reports surfacing in 25 …
healthcare settings and are emerging opportunistic pathogens with reports surfacing in 25 …