How active mechanics and regulatory biochemistry combine to form patterns in development

P Gross, KV Kumar, SW Grill - Annual review of biophysics, 2017 - annualreviews.org
The development of organisms starting from their zygotic state involves a tight integration of
the myriad biochemical signaling interactions with the mechanical forces that eventually …

Challenges in inferring the directionality of active molecular processes from single-molecule fluorescence resonance energy transfer trajectories

A Godec, DE Makarov - The journal of physical chemistry letters, 2022 - ACS Publications
We discuss some of the practical challenges that one faces in using stochastic
thermodynamics to infer directionality of molecular machines from experimental single …

Vimentin intermediate filaments stabilize dynamic microtubules by direct interactions

L Schaedel, C Lorenz, AV Schepers, S Klumpp… - Nature …, 2021 - nature.com
The cytoskeleton determines cell mechanics and lies at the heart of important cellular
functions. Growing evidence suggests that the manifold tasks of the cytoskeleton rely on the …

Perspective: Mechanochemistry of biological and synthetic molecules

DE Makarov - The Journal of chemical physics, 2016 - pubs.aip.org
Coupling of mechanical forces and chemical transformations is central to the biophysics of
molecular machines, polymer chemistry, fracture mechanics, tribology, and other disciplines …

Control of protein-based pattern formation via guiding cues

T Burkart, MC Wigbers, L Würthner, E Frey - Nature Reviews Physics, 2022 - nature.com
Proteins control many vital functions in living cells, such as cell growth and cell division.
Reliable coordination of these functions requires the spatial and temporal organization of …

Elucidating interplay of speed and accuracy in biological error correction

K Banerjee, AB Kolomeisky… - Proceedings of the …, 2017 - National Acad Sciences
One of the most fascinating features of biological systems is the ability to sustain high
accuracy of all major cellular processes despite the stochastic nature of underlying chemical …

Tandem catalysts for polyethylene upcycling: A simple kinetic model

D Guironnet, B Peters - The Journal of Physical Chemistry A, 2020 - ACS Publications
Of all plastics, the most abundantly produced is polyethylene, most of which is destined for
landfills, shipping ports, and natural environments. The limited degradability and …

[图书][B] Single molecule science: physical principles and models

DE Makarov - 2015 - books.google.com
The observation and manipulation of individual molecules is one of the most exciting
developments in modern molecular science, and the utility of single-molecule methods has …

Barrier crossing dynamics from single-molecule measurements

DE Makarov - The Journal of Physical Chemistry B, 2021 - ACS Publications
Chemists visualize chemical reactions as motion along one-dimensional “reaction
coordinates” over free energy barriers. Various rate theories, such as transition state theory …

Collective dynamics of processive cytoskeletal motors

RT McLaughlin, MR Diehl, AB Kolomeisky - Soft matter, 2016 - pubs.rsc.org
Major cellular processes are supported by various biomolecular motors that usually operate
together as teams. We present an overview of the collective dynamics of processive …