Instrumentation at the leading edge of proteomics

TM Peters-Clarke, JJ Coon, NM Riley - Analytical Chemistry, 2024 - ACS Publications
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …

A tutorial review of labeling methods in mass spectrometry-based quantitative proteomics

Z Wang, PK Liu, L Li - ACS Measurement Science Au, 2024 - ACS Publications
Recent advancements in mass spectrometry (MS) have revolutionized quantitative
proteomics, with multiplex isotope labeling emerging as a key strategy for enhancing …

High-throughput relative quantification of fatty acids by 12-plex isobaric labeling and microchip capillary electrophoresis-Mass spectrometry

Z Wang, M Li, S Xu, L Sun, L Li - Analytica Chimica Acta, 2024 - Elsevier
Abstract Background Fatty acids (FAs) are essential cellular components and play important
roles in various biological processes. Importantly, FAs produced by microorganisms from …

Enhanced multiplexing technology for proteomics

BL Bowser, RAS Robinson - Annual Review of Analytical …, 2023 - annualreviews.org
The identification of thousands of proteins and their relative levels of expression has
furthered understanding of biological processes and disease and stimulated new systems …

Boosting the Sensitivity of Quantitative Single-Cell Proteomics with Infrared-Tandem Mass Tags

TM Peters-Clarke, Y Liang, KL Mertz… - Journal of Proteome …, 2024 - ACS Publications
Single-cell proteomics is a powerful approach to precisely profile protein landscapes within
individual cells toward a comprehensive understanding of proteomic functions and tissue …

Optimization of higher-energy collisional dissociation fragmentation energy for intact protein-level tandem mass tag labeling

Y Guo, T Chowdhury, M Seshadri… - Journal of proteome …, 2023 - ACS Publications
Isobaric chemical tag labeling (eg, TMT) is a commonly used approach in quantitative
proteomics, and quantification is enabled through detection of low-mass reporter ions …

Sensitive N-Glycopeptide Profiling of Single and Rare Cells Using an Isobaric Labeling Strategy without Enrichment

L Kong, F Li, W Fang, Z Du, G Wang, Y Zhang… - Analytical …, 2023 - ACS Publications
Single-cell omics is critical in revealing population heterogeneity, discovering unique
features of individual cells, and identifying minority subpopulations of interest. As one of the …

Optimization of glycopeptide enrichment techniques for the identification of clinical biomarkers

S Onigbinde, CD Gutierrez Reyes… - Expert Review of …, 2024 - Taylor & Francis
Introduction The identification and characterization of glycopeptides through LC-MS/MS and
advanced enrichment techniques are crucial for advancing clinical glycoproteomics …

Mass spectrometry-based glycoproteomic workflows for cancer biomarker discovery

EH Doud, ES Yeh - Technology in Cancer Research & …, 2023 - journals.sagepub.com
Glycosylation has a clear role in cancer initiation and progression, with numerous studies
identifying distinct glycan features or specific glycoproteoforms associated with cancer …

Evaluating cPILOT Data toward Quality Control Implementation

BL Bowser, KL Patterson… - Journal of the American …, 2023 - ACS Publications
Multiplexing enables the monitoring of hundreds to thousands of proteins in quantitative
proteomics analyses and increases sample throughput. In most mass-spectrometry-based …