DNA metabarcoding in diet studies: Unveiling ecological aspects in aquatic and terrestrial ecosystems

LL de Sousa, SM Silva, R Xavier - Environmental DNA, 2019 - Wiley Online Library
Effective conservation of species and ecosystems requires the understanding of important
ecological traits, such as dietary habits, food webs, and trophic niches. In diet studies, the …

Toward a global reference database of COI barcodes for marine zooplankton

A Bucklin, KTCA Peijnenburg, KN Kosobokova… - Marine Biology, 2021 - Springer
Abstract Characterization of species diversity of zooplankton is key to understanding,
assessing, and predicting the function and future of pelagic ecosystems throughout the …

How quantitative is metabarcoding: A meta‐analytical approach

PD Lamb, E Hunter, JK Pinnegar, S Creer… - Molecular …, 2019 - Wiley Online Library
Metabarcoding has been used in a range of ecological applications such as taxonomic
assignment, dietary analysis and the analysis of environmental DNA. However, after a …

A paradigm shift in the trophic importance of jellyfish?

GC Hays, TK Doyle, JDR Houghton - Trends in ecology & evolution, 2018 - cell.com
The past 30 years have seen several paradigm shifts in our understanding of how ocean
ecosystems function. Now recent technological advances add to an overwhelming body of …

Fish as predators and prey: DNA‐based assessment of their role in food webs

M Traugott, B Thalinger, C Wallinger… - Journal of Fish …, 2021 - Wiley Online Library
Fish are both consumers and prey, and as such part of a dynamic trophic network.
Measuring how they are trophically linked, both directly and indirectly, to other species is …

Stomach content analysis in cephalopods: past research, current challenges, and future directions

CM Ibáñez, R Riera, T Leite… - Reviews in Fish Biology …, 2021 - Springer
Dietary descriptions based on stomach content are pervasive regardless of the biases
concerning its methodology, statistics and descriptors. We here review different biases on …

Elucidating shark diets with DNA metabarcoding from cloacal swabs

MPM van Zinnicq Bergmann… - Molecular Ecology …, 2021 - Wiley Online Library
Animal dietary information provides the foundation for understanding trophic relationships,
which is essential for ecosystem management. Yet, in marine systems, high‐resolution diet …

Effectiveness of blocking primers and a peptide nucleic acid (PNA) clamp for 18S metabarcoding dietary analysis of herbivorous fish

C Homma, D Inokuchi, Y Nakamura, WH Uy… - PLoS one, 2022 - journals.plos.org
The structure of food webs and carbon flow in aquatic ecosystems can be better understood
by studying contributing factors such as the diets of herbivorous fish. Metabarcoding using a …

Diet Composition and Variability of Wild Octopus vulgaris and Alloteuthis media (Cephalopoda) Paralarvae: a Metagenomic Approach

L Olmos-Pérez, Á Roura, GJ Pierce, S Boyer… - Frontiers in …, 2017 - frontiersin.org
The high mortality of cephalopod early stages is the main bottleneck to grow them from
paralarvae to adults in culture conditions, probably because the inadequacy of the diet that …

DNA metabarcoding of cloacal swabs provides insight into diets of highly migratory sharks in the mid‐Atlantic bight

JA Olin, H Urakawa, MG Frisk, AL Newton… - Journal of fish …, 2023 - Wiley Online Library
The abundances of migratory shark species observed throughout the Mid‐Atlantic Bight
(MAB) during productive summer months suggest that this region provides critical habitat …