Microbial and animal rhodopsins: structures, functions, and molecular mechanisms

OP Ernst, DT Lodowski, M Elstner, P Hegemann… - Chemical …, 2014 - ACS Publications
Organisms of all domains of life use photoreceptor proteins to sense and respond to light.
The light-sensitivity of photoreceptor proteins arises from bound chromophores such as …

Mixed quantum mechanical/molecular mechanical molecular dynamics simulations of biological systems in ground and electronically excited states

E Brunk, U Rothlisberger - Chemical reviews, 2015 - ACS Publications
The quantum nature of electrons and nuclei is manifested in countless biological events
including the rearrangements of electrons in biochemical reactions, electron and proton …

Theory and simulation of the ultrafast double-bond isomerization of biological chromophores

S Gozem, HL Luk, I Schapiro, M Olivucci - Chemical reviews, 2017 - ACS Publications
Ultrafast processes in light-absorbing proteins have been implicated in the primary step in
the light-to-energy conversion and the initialization of photoresponsive biological functions …

QM/MM: what have we learned, where are we, and where do we go from here?

H Lin, DG Truhlar - Theoretical Chemistry Accounts, 2007 - Springer
This paper briefly reviews the current status of the most popular methods for combined
quantum mechanical/molecular mechanical (QM/MM) calculations, including their …

Biomolecular QM/MM simulations: What are some of the “burning issues”?

Q Cui, T Pal, L Xie - The Journal of Physical Chemistry B, 2021 - ACS Publications
QM/MM simulations have become an indispensable tool in many chemical and biochemical
investigations. Considering the tremendous degree of success, including recognition by a …

[图书][B] Quantum effects in biology

M Mohseni, Y Omar, GS Engel, MB Plenio - 2014 - books.google.com
Quantum mechanics provides the most accurate microscopic description of the world around
us, yet the interface between quantum mechanics and biology is only now being explored …

Reference energies for double excitations

PF Loos, M Boggio-Pasqua, A Scemama… - Journal of chemical …, 2019 - ACS Publications
Excited states exhibiting double-excitation character are notoriously difficult to model using
conventional single-reference methods, such as adiabatic time-dependent density functional …

Accurate Computation of the Absorption Spectrum of Chlorophyll a with Pair Natural Orbital Coupled Cluster Methods

A Sirohiwal, R Berraud-Pache, F Neese… - The Journal of …, 2020 - ACS Publications
The ability to accurately compute low-energy excited states of chlorophylls is critically
important for understanding the vital roles they play in light harvesting, energy transfer, and …

The SCC-DFTB method and its application to biological systems

M Elstner - Theoretical Chemistry Accounts, 2006 - Springer
The Self-consistent charge density functional tight-binding (SCC-DFTB) is an approximate
quantum chemical method derived from density functional theory (DFT) based on a second …

First-principles calculations of zero-field splitting parameters

D Ganyushin, F Neese - The Journal of chemical physics, 2006 - pubs.aip.org
In this work, an implementation of an approach to calculate the zero-field splitting (ZFS)
constants in the framework of ab initio methods such as complete active space self …