Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants

GN Feliner, JA Rosselló - Molecular phylogenetics and evolution, 2007 - Elsevier
The internal transcribed spacers (ITS) of the nuclear ribosomal 18S–5.8 S–26S cistron
continue to be the most popular non-plastid region for species-level phylogenetic studies of …

Chromosome numbers in plant cytotaxonomy: concepts and implications

M Guerra - Cytogenetic and Genome research, 2008 - karger.com
Chromosome number is the karyotype feature most commonly used in cytotaxonomical
analyses. The chromosome number can be a plesiomorphic characteristic of a large clade …

Distribution of 45S rDNA sites in chromosomes of plants: structural and evolutionary implications

F Roa, M Guerra - BMC Evolutionary Biology, 2012 - Springer
Background 45S rDNA sites are the most widely documented chromosomal regions in
eukaryotes. The analysis of the distribution of these sites along the chromosome in several …

Genomics of Phaseolus Beans, a Major Source of Dietary Protein and Micronutrients in the Tropics

P Gepts, FJL Aragão, E Barros, MW Blair… - Genomics of tropical …, 2008 - Springer
Common bean is grown and consumed principally in developing countries in Latin America,
Africa, and Asia. It is largely a subsistence crop eaten by its producers and, hence, is …

Linkage disequilibrium and population structure in wild and domesticated populations of Phaseolus vulgaris L.

M Rossi, E Bitocchi, E Bellucci, L Nanni… - Evolutionary …, 2009 - Wiley Online Library
Together with the knowledge of the population structure, a critical aspect for the planning of
association and/or population genomics studies is the level of linkage disequilibrium (LD) …

Cytotaxonomy: the end of childhood

M Guerra - Plant Biosystems-An International Journal Dealing with …, 2012 - Taylor & Francis
Detailed comparative karyotype analyses have proved to be an important tool for taxonomy
and for understanding chromosome evolution. The basic principle of cytotaxonomy is that …

Karyotype diversity and evolutionary trends in angiosperms

H Weiss-Schneeweiss, GM Schneeweiss - Plant Genome Diversity …, 2012 - Springer
Karyotypic change constitutes an important evolutionary mechanism contributing to in
angiosperm diversification and speciation. Comparative analyses of the karyotype usually …

The dynamic interplay between ribosomal DNA and transposable elements: a perspective from genomics and cytogenetics

S Garcia, A Kovarik, S Maiwald, L Mann… - Molecular Biology …, 2024 - academic.oup.com
Although both are salient features of genomes, at first glance ribosomal DNAs and
transposable elements are genetic elements with not much in common: whereas ribosomal …

Uneven recombination rate and linkage disequilibrium across a reference SNP map for common bean (Phaseolus vulgaris L.)

MW Blair, AJ Cortés, AD Farmer, W Huang… - PloS one, 2018 - journals.plos.org
Recombination (R) rate and linkage disequilibrium (LD) analyses are the basis for plant
breeding. These vary by breeding system, by generation of inbreeding or outcrossing and by …

Evolutionary dynamics of rDNA clusters on chromosomes of moths and butterflies (Lepidoptera)

P Nguyen, K Sahara, A Yoshido, F Marec - Genetica, 2010 - Springer
We examined chromosomal distribution of major ribosomal DNAs (rDNAs), clustered in the
nucleolar organizer regions (NORs), in 18 species of moths and butterflies using …