Artificial intelligence in histopathology: enhancing cancer research and clinical oncology

A Shmatko, N Ghaffari Laleh, M Gerstung, JN Kather - Nature cancer, 2022 - nature.com
Artificial intelligence (AI) methods have multiplied our capabilities to extract quantitative
information from digital histopathology images. AI is expected to reduce workload for human …

Artificial intelligence to identify genetic alterations in conventional histopathology

D Cifci, S Foersch, JN Kather - The Journal of Pathology, 2022 - Wiley Online Library
Precision oncology relies on the identification of targetable molecular alterations in tumor
tissues. In many tumor types, a limited set of molecular tests is currently part of standard …

Benchmarking weakly-supervised deep learning pipelines for whole slide classification in computational pathology

NG Laleh, HS Muti, CML Loeffler, A Echle… - Medical image …, 2022 - Elsevier
Artificial intelligence (AI) can extract visual information from histopathological slides and
yield biological insight and clinical biomarkers. Whole slide images are cut into thousands of …

[HTML][HTML] Deep learning-based histotype diagnosis of ovarian carcinoma whole-slide pathology images

H Farahani, J Boschman, D Farnell, A Darbandsari… - Modern Pathology, 2022 - Elsevier
Ovarian carcinoma has the highest mortality of all female reproductive cancers and current
treatment has become histotype-specific. Pathologists diagnose five common histotypes by …

[HTML][HTML] Immune subtyping of melanoma whole slide images using multiple instance learning

L Godson, N Alemi, J Nsengimana, GP Cook… - Medical Image …, 2024 - Elsevier
Determining early-stage prognostic markers and stratifying patients for effective treatment
are two key challenges for improving outcomes for melanoma patients. Previous studies …

Giga-ssl: Self-supervised learning for gigapixel images

T Lazard, M Lerousseau… - Proceedings of the …, 2023 - openaccess.thecvf.com
Whole slide images (WSI) are microscopy images of stained tissue slides routinely prepared
for diagnosis and treatment selection in medical practice. WSI are very large (gigapixel size) …

A review of predictive and contrastive self-supervised learning for medical images

WC Wang, E Ahn, D Feng, J Kim - Machine Intelligence Research, 2023 - Springer
Over the last decade, supervised deep learning on manually annotated big data has been
progressing significantly on computer vision tasks. But, the application of deep learning in …

[HTML][HTML] Cross-scale multi-instance learning for pathological image diagnosis

R Deng, C Cui, LW Remedios, S Bao, RM Womick… - Medical image …, 2024 - Elsevier
Analyzing high resolution whole slide images (WSIs) with regard to information across
multiple scales poses a significant challenge in digital pathology. Multi-instance learning …

Deep learning-based prediction of molecular tumor biomarkers from H&E: a practical review

HD Couture - Journal of Personalized Medicine, 2022 - mdpi.com
Molecular and genomic properties are critical in selecting cancer treatments to target
individual tumors, particularly for immunotherapy. However, the methods to assess such …

Deep learning identifies morphological patterns of homologous recombination deficiency in luminal breast cancers from whole slide images

T Lazard, G Bataillon, P Naylor, T Popova… - Cell Reports …, 2022 - cell.com
Homologous recombination DNA-repair deficiency (HRD) is becoming a well-recognized
marker of platinum salt and polyADP-ribose polymerase inhibitor chemotherapies in ovarian …