cis-Regulatory Elements in Plant Development, Adaptation, and Evolution

AP Marand, AL Eveland, K Kaufmann… - Annual review of …, 2023 - annualreviews.org
cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …

Effector-mediated plant–virus–vector interactions

S Ray, CL Casteel - The Plant Cell, 2022 - academic.oup.com
Hemipterans (such as aphids, whiteflies, and leafhoppers) are some of the most devastating
insect pests due to the numerous plant pathogens they transmit as vectors, which are …

[HTML][HTML] Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery

X Xu, M Crow, BR Rice, F Li, B Harris, L Liu… - Developmental Cell, 2021 - cell.com
Crop productivity depends on activity of meristems that produce optimized plant
architectures, including that of the maize ear. A comprehensive understanding of …

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing

B Wang, E Tseng, M Regulski, TA Clark, T Hon… - Nature …, 2016 - nature.com
Zea mays is an important genetic model for elucidating transcriptional networks.
Uncertainties about the complete structure of mRNA transcripts limit the progress of research …

Integration of omic networks in a developmental atlas of maize

JW Walley, RC Sartor, Z Shen, RJ Schmitz, KJ Wu… - Science, 2016 - science.org
Coexpression networks and gene regulatory networks (GRNs) are emerging as important
tools for predicting functional roles of individual genes at a system-wide scale. To enable …

Leaf angle: a target of genetic improvement in cereal crops tailored for high‐density planting

Y Cao, Z Zhong, H Wang, R Shen - Plant Biotechnology …, 2022 - Wiley Online Library
High‐density planting is an effective measure for increasing crop yield per unit land area.
Leaf angle (LA) is a key trait of plant architecture and a target for genetic improvement of …

Feedback regulation of ABA signaling and biosynthesis by a bZIP transcription factor targets drought-resistance-related genes

W Zong, N Tang, J Yang, L Peng, S Ma, Y Xu… - Plant …, 2016 - academic.oup.com
The OsbZIP23 transcription factor has been characterized for its essential role in drought
resistance in rice (Oryza sativa), but the mechanism is unknown. In this study, we first …

Charting plant gene functions in the multi-omics and single-cell era

T Depuydt, B De Rybel, K Vandepoele - Trends in Plant Science, 2023 - cell.com
Despite the increased access to high-quality plant genome sequences, the set of genes with
a known function remains far from complete. With the advent of novel bulk and single-cell …

Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture

Z Lu, H Yu, G Xiong, J Wang, Y Jiao, G Liu… - The Plant …, 2013 - academic.oup.com
Abstract IDEAL PLANT ARCHITECTURE1 (IPA1) is critical in regulating rice (Oryza sativa)
plant architecture and substantially enhances grain yield. To elucidate its molecular basis …

Dynamic transcriptome landscape of maize embryo and endosperm development

J Chen, B Zeng, M Zhang, S Xie, G Wang… - Plant …, 2014 - academic.oup.com
Maize (Zea mays) is an excellent cereal model for research on seed development because
of its relatively large size for both embryo and endosperm. Despite the importance of seed in …