Plant synthetic biology

W Liu, CN Stewart - Trends in Plant Science, 2015 - cell.com
Plant synthetic biology is an emerging field that combines engineering principles with plant
biology toward the design and production of new devices. This emerging field should play …

Design automation in synthetic biology

E Appleton, C Madsen, N Roehner… - Cold Spring Harbor …, 2017 - cshperspectives.cshlp.org
Design automation refers to a category of software tools for designing systems that work
together in a workflow for designing, building, testing, and analyzing systems with a target …

Synthetic circuits integrating logic and memory in living cells

P Siuti, J Yazbek, TK Lu - Nature biotechnology, 2013 - nature.com
Logic and memory are essential functions of circuits that generate complex, state-dependent
responses. Here we describe a strategy for efficiently assembling synthetic genetic circuits …

Iterative plug-and-play methodology for constructing and modifying synthetic gene networks

KD Litcofsky, RB Afeyan, RJ Krom, AS Khalil… - Nature …, 2012 - nature.com
We present a methodology for the design, construction and modification of synthetic gene
networks. This method emphasizes post-assembly modification of constructs based on …

Engineering genetic circuits: advancements in genetic design automation tools and standards for synthetic biology

L Buecherl, CJ Myers - Current opinion in microbiology, 2022 - Elsevier
Highlights•Synthetic biology aims to apply engineering principles in biology.•Insufficient part
libraries, standards, and software are challenges to the field.•Working on the challenges will …

DeviceEditor visual biological CAD canvas

J Chen, D Densmore, TS Ham, JD Keasling… - Journal of biological …, 2012 - Springer
Abstract Background Biological Computer Aided Design (bioCAD) assists the de novo
design and selection of existing genetic components to achieve a desired biological activity …

Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration

LBA Woodruff, TE Gorochowski… - Nucleic Acids …, 2017 - academic.oup.com
Genetic designs can consist of dozens of genes and hundreds of genetic parts. After
evaluating a design, it is desirable to implement changes without the cost and burden of …

Computational re-design of synthetic genetic oscillators for independent amplitude and frequency modulation

M Tomazou, M Barahona, KM Polizzi, GB Stan - Cell systems, 2018 - cell.com
To perform well in biotechnology applications, synthetic genetic oscillators must be
engineered to allow independent modulation of amplitude and period. This need is currently …

Needs and opportunities in bio-design automation: four areas for focus

E Appleton, D Densmore, C Madsen… - Current Opinion in …, 2017 - Elsevier
Bio-design automation (BDA) is an emerging field focused on computer-aided design,
engineering principles, and automated manufacturing of biological systems. Here we …

PaR-PaR laboratory automation platform

G Linshiz, N Stawski, S Poust, C Bi… - ACS synthetic …, 2013 - ACS Publications
Labor-intensive multistep biological tasks, such as the construction and cloning of DNA
molecules, are prime candidates for laboratory automation. Flexible and biology-friendly …