Incongruence in the phylogenomics era

JL Steenwyk, Y Li, X Zhou, XX Shen… - Nature Reviews Genetics, 2023 - nature.com
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …

Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

[HTML][HTML] Plastid phylogenomic insights into relationships of all flowering plant families

HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai… - BMC biology, 2021 - Springer
Background Flowering plants (angiosperms) are dominant components of global terrestrial
ecosystems, but phylogenetic relationships at the familial level and above remain only …

[HTML][HTML] An updated tribal classification of Lamiaceae based on plastome phylogenomics

F Zhao, YP Chen, Y Salmaki, BT Drew, TC Wilson… - BMC biology, 2021 - Springer
Background A robust molecular phylogeny is fundamental for developing a stable
classification and providing a solid framework to understand patterns of diversification …

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

Angiosperm Phylogeny Group… - Botanical journal of …, 2016 - academic.oup.com
An update of the Angiosperm Phylogeny Group (APG) classification of the orders and
families of angiosperms is presented. Several new orders are recognized: Boraginales …

[HTML][HTML] The water lily genome and the early evolution of flowering plants

L Zhang, F Chen, X Zhang, Z Li, Y Zhao, R Lohaus… - Nature, 2020 - nature.com
Water lilies belong to the angiosperm order Nymphaeales. Amborellales, Nymphaeales and
Austrobaileyales together form the so-called ANA-grade of angiosperms, which are extant …

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

M Griesmann, Y Chang, X Liu, Y Song, G Haberer… - Science, 2018 - science.org
INTRODUCTION Access to nutrients such as nitrogen is required for plant growth. Legumes
and nine additional plant families benefit from the nitrogen-fixing root nodule (NFN) …

[HTML][HTML] The Apostasia genome and the evolution of orchids

GQ Zhang, KW Liu, Z Li, R Lohaus, YY Hsiao, SC Niu… - Nature, 2017 - nature.com
Constituting approximately 10% of flowering plant species, orchids (Orchidaceae) display
unique flower morphologies, possess an extraordinary diversity in lifestyle, and have …

Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics

SD Zhang, JJ Jin, SY Chen, MW Chase… - New …, 2017 - Wiley Online Library
Phylogenetic relationships in Rosaceae have long been problematic because of frequent
hybridisation, apomixis and presumed rapid radiation, and their historical diversification has …

[HTML][HTML] The rubber tree genome reveals new insights into rubber production and species adaptation

C Tang, M Yang, Y Fang, Y Luo, S Gao, X Xiao, Z An… - Nature plants, 2016 - nature.com
Abstract The Para rubber tree (Hevea brasiliensis) is an economically important tropical tree
species that produces natural rubber, an essential industrial raw material. Here we present a …