RNA splicing factors as oncoproteins and tumour suppressors

H Dvinge, E Kim, O Abdel-Wahab… - Nature Reviews Cancer, 2016 - nature.com
The recent genomic characterization of cancers has revealed recurrent somatic point
mutations and copy number changes affecting genes encoding RNA splicing factors. Initial …

A census of human RNA-binding proteins

S Gerstberger, M Hafner, T Tuschl - Nature Reviews Genetics, 2014 - nature.com
Post-transcriptional gene regulation (PTGR) concerns processes involved in the maturation,
transport, stability and translation of coding and non-coding RNAs. RNA-binding proteins …

Aberrant RNA splicing in cancer; expression changes and driver mutations of splicing factor genes

A Sveen, S Kilpinen, A Ruusulehto, RA Lothe… - Oncogene, 2016 - nature.com
Alternative splicing is a widespread process contributing to structural transcript variation and
proteome diversity. In cancer, the splicing process is commonly disrupted, resulting in both …

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

S Shukla, E Kavak, M Gregory, M Imashimizu… - Nature, 2011 - nature.com
Alternative splicing of pre-messenger RNA is a key feature of transcriptome expansion in
eukaryotic cells, yet its regulation is poorly understood. Spliceosome assembly occurs co …

The spliceosome: design principles of a dynamic RNP machine

MC Wahl, CL Will, R Lührmann - cell, 2009 - cell.com
Ribonucleoproteins (RNPs) mediate key cellular functions such as gene expression and its
regulation. Whereas most RNP enzymes are stable in composition and harbor preformed …

Specificity and nonspecificity in RNA–protein interactions

E Jankowsky, ME Harris - Nature reviews Molecular cell biology, 2015 - nature.com
To fully understand the regulation of gene expression, it is critical to quantitatively define
whether and how RNA-binding proteins (RBPs) discriminate between alternative binding …

Functional diversity of the hnRNPs: past, present and perspectives

SP Han, YH Tang, R Smith - Biochemical Journal, 2010 - portlandpress.com
The hnRNPs (heterogeneous nuclear ribonucleoproteins) are RNA-binding proteins with
important roles in multiple aspects of nucleic acid metabolism, including the packaging of …

hnRNP A1: the Swiss army knife of gene expression

J Jean-Philippe, S Paz, M Caputi - International journal of molecular …, 2013 - mdpi.com
Eukaryotic cells express a large variety of RNA binding proteins (RBPs), with diverse
affinities and specificities towards target RNAs. These proteins play a crucial role in almost …

Predicting dynamic cellular protein–RNA interactions by deep learning using in vivo RNA structures

L Sun, K Xu, W Huang, YT Yang, P Li, L Tang, T Xiong… - Cell research, 2021 - nature.com
Interactions with RNA-binding proteins (RBPs) are integral to RNA function and cellular
regulation, and dynamically reflect specific cellular conditions. However, presently available …

[HTML][HTML] Comprehensive genomic characterization of RNA-binding proteins across human cancers

ZL Wang, B Li, YX Luo, Q Lin, SR Liu, XQ Zhang… - Cell reports, 2018 - cell.com
RNA-binding proteins (RBPs) regulate the expression of thousands of transcripts, and some
are reported to be involved in human tumorigenesis. However, little is known about the …