The changing paradigm of intron retention: regulation, ramifications and recipes

G Monteuuis, JJL Wong, CG Bailey… - Nucleic acids …, 2019 - academic.oup.com
Intron retention (IR) is a form of alternative splicing that has long been neglected in
mammalian systems although it has been studied for decades in non-mammalian species …

[HTML][HTML] Behind the scenes of HIV-1 replication: Alternative splicing as the dependency factor on the quiet

H Sertznig, F Hillebrand, S Erkelenz, H Schaal… - Virology, 2018 - Elsevier
Alternative splicing plays a key role in the HIV-1 life cycle and is essential to maintain an
equilibrium of mRNAs that encode viral proteins and polyprotein-isoforms. In particular …

Focus on translation initiation of the HIV-1 mRNAs

S De Breyne, T Ohlmann - International journal of molecular sciences, 2018 - mdpi.com
To replicate and disseminate, viruses need to manipulate and modify the cellular machinery
for their own benefit. We are interested in translation, which is one of the key steps of gene …

Intron retention in viruses and cellular genes: Detention, border controls and passports

D Rekosh, ML Hammarskjold - Wiley Interdisciplinary Reviews …, 2018 - Wiley Online Library
Intron retention (IR), where one or more introns remain in the RNA after splicing, was long
thought to be rare in mammalian cells, albeit common in plants and some viruses. Largely …

Y-box proteins combine versatile cold shock domains and arginine-rich motifs (ARMs) for pleiotropic functions in RNA biology

KC Kleene - Biochemical Journal, 2018 - portlandpress.com
Y-box proteins are single-strand DNA-and RNA-binding proteins distinguished by a
conserved cold shock domain (CSD) and a variable C-terminal domain organized into …

An NXF1 mRNA with a retained intron is expressed in hippocampal and neocortical neurons and is translated into a protein that functions as an Nxf1 cofactor

Y Li, Y Bor, MP Fitzgerald, KS Lee… - Molecular biology of …, 2016 - Am Soc Cell Biol
The Nxf1 protein is a major nuclear export receptor for the transport of mRNA, and it also is
essential for export of retroviral mRNAs with retained introns. In the latter case, it binds to …

HIV-1 Rev-RRE functional activity in primary isolates is highly dependent on minimal context-dependent changes in Rev

G Dzhivhuho, J Holsey, E Honeycutt, H O'Farrell… - Scientific Reports, 2022 - nature.com
During HIV infection, intron-containing viral mRNAs are exported from the cell nucleus to the
cytoplasm to complete the replication cycle. Cellular restrictions on the export of …

Novel HIV-1 RNA biogenesis inhibitors identified by virtual pharmacophore-based screening

Á Simba-Lahuasi, J Alcamí, M Beltrán… - Biochemical …, 2023 - Elsevier
The complex between the Rev protein of HIV-1 and the Rev Recognition Element (RRE)
within the virus RNA promotes nuclear export of unspliced or incompletely spliced viral …

PJA2 ubiquitinates the HIV-1 Tat protein with atypical chain linkages to activate viral transcription

TB Faust, Y Li, GM Jang, JR Johnson, S Yang… - Scientific Reports, 2017 - nature.com
Transcription complexes that assemble at the HIV-1 promoter efficiently initiate transcription
but generate paused RNA polymerase II downstream from the start site. The virally encoded …

A small-molecule inhibitor of HIV-1 Rev function detected by a diversity screen based on RRE-Rev interference

S Prado, M Beltrán, Á Moreno, LM Bedoya… - Biochemical …, 2018 - Elsevier
The Rev protein of HIV-1 binds to the Rev Recognition Element (RRE) in the virus RNA to
promote nuclear export of unspliced and partially spliced transcripts, an essential step in the …