A new look at state-space models for neural data

L Paninski, Y Ahmadian, DG Ferreira… - Journal of computational …, 2010 - Springer
State space methods have proven indispensable in neural data analysis. However, common
methods for performing inference in state-space models with non-Gaussian observations …

Statistical analysis of spatial expression patterns for spatially resolved transcriptomic studies

S Sun, J Zhu, X Zhou - Nature methods, 2020 - nature.com
Identifying genes that display spatial expression patterns in spatially resolved transcriptomic
studies is an important first step toward characterizing the spatial transcriptomic landscape …

Wide-field and two-photon imaging of brain activity with voltage and calcium-sensitive dyes

R Homma, BJ Baker, L Jin, O Garaschuk… - Dynamic Brain Imaging …, 2009 - Springer
This chapter presents three examples of imaging brain activity with voltage-or calcium-
sensitive dyes. Because experimental measurements are limited by low sensitivity, the …

Mitral cells in the olfactory bulb are mainly excited through a multistep signaling path

DH Gire, KM Franks, JD Zak, KF Tanaka… - Journal of …, 2012 - Soc Neuroscience
Within the olfactory system, information flow from the periphery onto output mitral cells (MCs)
of the olfactory bulb (OB) has been thought to be mediated by direct synaptic inputs from …

The spatio‐temporal characteristics of action potential initiation in layer 5 pyramidal neurons: a voltage imaging study

MA Popovic, AJ Foust, DA McCormick… - The Journal of …, 2011 - Wiley Online Library
Non‐technical summary Axons are long process of nerve cells that mediate communication
and control within the organism. Mammalian neurons have developed a complex ion …

Tracking individual action potentials throughout mammalian axonal arbors

M Radivojevic, F Franke, M Altermatt, J Müller… - Elife, 2017 - elifesciences.org
Axons are neuronal processes specialized for conduction of action potentials (APs). The
timing and temporal precision of APs when they reach each of the synapses are …

Adaptive stimulus optimization for sensory systems neuroscience

C DiMattina, K Zhang - Frontiers in neural circuits, 2013 - frontiersin.org
In this paper, we review several lines of recent work aimed at developing practical methods
for adaptive on-line stimulus generation for sensory neurophysiology. We consider various …

Cortical dendritic spine heads are not electrically isolated by the spine neck from membrane potential signals in parent dendrites

MA Popovic, X Gao, NT Carnevale, D Zecevic - Cerebral Cortex, 2014 - academic.oup.com
The evidence for an important hypothesis that cortical spine morphology might participate in
modifying synaptic efficacy that underlies plasticity and possibly learning and memory …

Imaging submillisecond membrane potential changes from individual regions of single axons, dendrites and spines

M Popovic, K Vogt, K Holthoff, A Konnerth… - … Potential Imaging in the …, 2015 - Springer
A central question in neuronal network analysis is how the interaction between individual
neurons produces behavior and behavioral modifications. This task depends critically on …

Imaging membrane potential changes from dendritic spines using computer-generated holography

D Tanese, JY Weng, V Zampini, V De Sars… - …, 2017 - spiedigitallibrary.org
Electrical properties of neuronal processes are extraordinarily complex, dynamic, and, in the
general case, impossible to predict in the absence of detailed measurements. To obtain …