Reprogramming the genetic code

D de la Torre, JW Chin - Nature Reviews Genetics, 2021 - nature.com
The encoded biosynthesis of proteins provides the ultimate paradigm for high-fidelity
synthesis of long polymers of defined sequence and composition, but it is limited to …

Engineering pyrrolysine systems for genetic code expansion and reprogramming

DL Dunkelmann, JW Chin - Chemical Reviews, 2024 - ACS Publications
Over the past 16 years, genetic code expansion and reprogramming in living organisms has
been transformed by advances that leverage the unique properties of pyrrolysyl-tRNA …

Continuous directed evolution of aminoacyl-tRNA synthetases

DI Bryson, C Fan, LT Guo, C Miller, D Söll… - Nature chemical …, 2017 - nature.com
Directed evolution of orthogonal aminoacyl-tRNA synthetases (AARSs) enables site-specific
installation of noncanonical amino acids (ncAAs) into proteins. Traditional evolution …

Expanding the substrate scope of pyrrolysyl-transfer RNA synthetase enzymes to include non-α-amino acids in vitro and in vivo

R Fricke, CV Swenson, LT Roe, NX Hamlish, B Shah… - Nature …, 2023 - nature.com
The absence of orthogonal aminoacyl-transfer RNA (tRNA) synthetases that accept non-l-α-
amino acids is a primary bottleneck hindering the in vivo translation of sequence-defined …

Engineered triply orthogonal pyrrolysyl–tRNA synthetase/tRNA pairs enable the genetic encoding of three distinct non-canonical amino acids

DL Dunkelmann, JCW Willis, AT Beattie, JW Chin - Nature chemistry, 2020 - nature.com
Expanding and reprogramming the genetic code of cells for the incorporation of multiple
distinct non-canonical amino acids (ncAAs), and the encoded biosynthesis of non-canonical …

Mutually orthogonal pyrrolysyl-tRNA synthetase/tRNA pairs

JCW Willis, JW Chin - Nature chemistry, 2018 - nature.com
Genetically encoding distinct non-canonical amino acids (ncAAs) into proteins synthesized
in cells requires mutually orthogonal aminoacyl-tRNA synthetase (aaRS)/tRNA pairs. The …

Genetic code expansion: inception, development, commercialization

M Manandhar, E Chun… - Journal of the American …, 2021 - ACS Publications
Virtually all natural proteins are built from only 20 amino acids, and while this makes
possible all the functions they perform, the ability to encode other amino acids selected for …

Pyrrolysyl-tRNA synthetase–tRNAPyl structure reveals the molecular basis of orthogonality

K Nozawa, P O'Donoghue, S Gundllapalli, Y Araiso… - Nature, 2009 - nature.com
Abstract Pyrrolysine (Pyl), the 22nd natural amino acid, is genetically encoded by UAG and
inserted into proteins by the unique suppressor tRNAPyl (ref.). The Methanosarcinaceae …

Crystal structures reveal an elusive functional domain of pyrrolysyl-tRNA synthetase

T Suzuki, C Miller, LT Guo, JML Ho, DI Bryson… - Nature chemical …, 2017 - nature.com
Pyrrolysyl-tRNA synthetase (PylRS) is a major tool in genetic code expansion using
noncanonical amino acids, yet its structure and function are not completely understood …

tRNA shape is an identity element for an archaeal pyrrolysyl-tRNA synthetase from the human gut

N Krahn, J Zhang, SV Melnikov, JM Tharp… - Nucleic Acids …, 2024 - academic.oup.com
Protein translation is orchestrated through tRNA aminoacylation and ribosomal elongation.
Among the highly conserved structure of tRNAs, they have distinguishing features which …