From hairballs to hypotheses–biological insights from microbial networks
L Röttjers, K Faust - FEMS microbiology reviews, 2018 - academic.oup.com
Microbial networks are an increasingly popular tool to investigate microbial community
structure, as they integrate multiple types of information and may represent systems-level …
structure, as they integrate multiple types of information and may represent systems-level …
Cross-biome comparison of microbial association networks
Clinical and environmental meta-omics studies are accumulating an ever-growing amount of
microbial abundance data over a wide range of ecosystems. With a sufficiently large sample …
microbial abundance data over a wide range of ecosystems. With a sufficiently large sample …
Disease outbreak accompanies the dispersive structure of shrimp gut bacterial community with a simple core microbiota
Z Yao, K Yang, L Huang, X Huang, L Qiuqian, K Wang… - AMB Express, 2018 - Springer
Increasing evidence has emerged supporting a tight link between gut bacterial community
and shrimp health. However, the knowledge about the variation of gut bacterial community …
and shrimp health. However, the knowledge about the variation of gut bacterial community …
Analysis of microbial functions in the rhizosphere using a metabolic-network based framework for metagenomics interpretation
Advances in metagenomics enable high resolution description of complex bacterial
communities in their natural environments. Consequently, conceptual approaches for …
communities in their natural environments. Consequently, conceptual approaches for …
Disentangling environmental effects in microbial association networks
Background Ecological interactions among microorganisms are fundamental for ecosystem
function, yet they are mostly unknown or poorly understood. High-throughput-omics can …
function, yet they are mostly unknown or poorly understood. High-throughput-omics can …
Fire modifies the phylogenetic structure of soil bacterial co‐occurrence networks
Fire alters ecosystems by changing the composition and community structure of soil
microbes. The phylogenetic structure of a community provides clues about its main …
microbes. The phylogenetic structure of a community provides clues about its main …
Community-level signatures of ecological succession in natural bacterial communities
A Pascual-García, T Bell - Nature communications, 2020 - nature.com
A central goal in microbial ecology is to simplify the extraordinary biodiversity that inhabits
natural environments into ecologically coherent units. We profiled (16S rRNA sequencing)> …
natural environments into ecologically coherent units. We profiled (16S rRNA sequencing)> …
Inference of environmental factor-microbe and microbe-microbe associations from metagenomic data using a hierarchical Bayesian statistical model
The inference of associations between environmental factors and microbes and among
microbes is critical to interpreting metagenomic data, but compositional bias, indirect …
microbes is critical to interpreting metagenomic data, but compositional bias, indirect …
Karst spring microbiome: diversity, core taxa, and community response to pathogens and antibiotic resistance gene contamination
Karst aquifers are important water resources for drinking water supplies worldwide. Although
they are susceptible to anthropogenic contamination due to their high permeability, there is …
they are susceptible to anthropogenic contamination due to their high permeability, there is …
Relationships between community composition, productivity and invasion resistance in semi-natural bacterial microcosms
Common garden experiments that inoculate a standardised growth medium with synthetic
microbial communities (ie constructed from individual isolates or using dilution cultures) …
microbial communities (ie constructed from individual isolates or using dilution cultures) …