Global plant stress signaling: reactive oxygen species at the cross-road

N Sewelam, K Kazan, PM Schenk - Frontiers in plant science, 2016 - frontiersin.org
Current technologies have changed biology into a data-intensive field and significantly
increased our understanding of signal transduction pathways in plants. However, global …

[HTML][HTML] Alternative splicing: new insights from global analyses

BJ Blencowe - Cell, 2006 - cell.com
Recent analyses of sequence and microarray data have suggested that alternative splicing
plays a major role in the generation of proteomic and functional diversity in metazoan …

Function of alternative splicing

S Stamm, S Ben-Ari, I Rafalska, Y Tang, Z Zhang… - Gene, 2005 - Elsevier
Alternative splicing is one of the most important mechanisms to generate a large number of
mRNA and protein isoforms from the surprisingly low number of human genes. Unlike …

An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers

PJ Smith, C Zhang, J Wang, SL Chew… - Human molecular …, 2006 - academic.oup.com
Numerous disease-associated point mutations exert their effects by disrupting the activity of
exonic splicing enhancers (ESEs). We previously derived position weight matrices to predict …

Reconstruction of cellular signalling networks and analysis of their properties

JA Papin, T Hunter, BO Palsson… - Nature reviews Molecular …, 2005 - nature.com
The study of cellular signalling over the past 20 years and the advent of high-throughput
technologies are enabling the reconstruction of large-scale signalling networks. After careful …

TILLING-a shortcut in functional genomics

M Kurowska, A Daszkowska-Golec, D Gruszka… - Journal of applied …, 2011 - Springer
Recent advances in large-scale genome sequencing projects have opened up new
possibilities for the application of conventional mutation techniques in not only forward but …

Biomedical language processing: what's beyond PubMed?

L Hunter, KB Cohen - Molecular cell, 2006 - cell.com
Exponential growth of the peer-reviewed literature and the breakdown of disciplinary
boundaries heralded by genome-scale instruments have made it harder than ever for …

Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2

C Zhang, Z Zhang, J Castle, S Sun… - Genes & …, 2008 - genesdev.cshlp.org
The precise regulation of many alternative splicing (AS) events by specific splicing factors is
essential to determine tissue types and developmental stages. However, the molecular …

Mutually exclusive splicing of the insect Dscam pre-mRNA directed by competing intronic RNA secondary structures

BR Graveley - Cell, 2005 - cell.com
Drosophila Dscam encodes 38,016 distinct axon guidance receptors through the mutually
exclusive alternative splicing of 95 variable exons. Importantly, known mechanisms that …

The architecture of pre-mRNAs affects mechanisms of splice-site pairing

KL Fox-Walsh, Y Dou, BJ Lam… - Proceedings of the …, 2005 - National Acad Sciences
The exon/intron architecture of genes determines whether components of the spliceosome
recognize splice sites across the intron or across the exon. Using in vitro splicing assays, we …