Controlling gene expression in response to stress

E De Nadal, G Ammerer, F Posas - Nature Reviews Genetics, 2011 - nature.com
Acute stress puts cells at risk, and rapid adaptation is crucial for maximizing cell survival.
Cellular adaptation mechanisms include modification of certain aspects of cell physiology …

Response to hyperosmotic stress

H Saito, F Posas - Genetics, 2012 - academic.oup.com
An appropriate response and adaptation to hyperosmolarity, ie., an external osmolarity that
is higher than the physiological range, can be a matter of life or death for all cells. It is …

High-resolution ribosome profiling defines discrete ribosome elongation states and translational regulation during cellular stress

CCC Wu, B Zinshteyn, KA Wehner, R Green - Molecular cell, 2019 - cell.com
Ribosomes undergo substantial conformational changes during translation elongation to
accommodate incoming aminoacyl-tRNAs and translocate along the mRNA template. We …

Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast

C Miller, B Schwalb, K Maier, D Schulz… - Molecular systems …, 2011 - embopress.org
To obtain rates of mRNA synthesis and decay in yeast, we established dynamic
transcriptome analysis (DTA). DTA combines non‐perturbing metabolic RNA labeling with …

The HOG pathway and the regulation of osmoadaptive responses in yeast

E de Nadal, F Posas - FEMS yeast research, 2022 - academic.oup.com
Cells coordinate intracellular activities in response to changes in the extracellular
environment to maximize their probability of survival and proliferation. Eukaryotic cells need …

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

MV Lee, SE Topper, SL Hubler, J Hose… - Molecular systems …, 2011 - embopress.org
The transcriptome and proteome change dynamically as cells respond to environmental
stress; however, prior proteomic studies reported poor correlation between mRNA and …

Hog1: 20 years of discovery and impact

JL Brewster, MC Gustin - Science signaling, 2014 - science.org
The protein kinase Hog1 (high osmolarity glycerol 1) was discovered 20 years ago, being
revealed as a central signaling mediator during osmoregulation in the budding yeast …

Microbial response to environmental stresses: from fundamental mechanisms to practical applications

N Guan, J Li, H Shin, G Du, J Chen, L Liu - Applied microbiology and …, 2017 - Springer
Environmental stresses are usually active during the process of microbial fermentation and
have significant influence on microbial physiology. Microorganisms have developed a series …

[HTML][HTML] Implementing Toxicity Testing in the 21st Century (TT21C): Making safety decisions using toxicity pathways, and progress in a prototype risk assessment

Y Adeleye, M Andersen, R Clewell, M Davies, M Dent… - Toxicology, 2015 - Elsevier
Risk assessment methodologies in toxicology have remained largely unchanged for
decades. The default approach uses high dose animal studies, together with human …

Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast

DH Lackner, MW Schmidt, S Wu, DA Wolf, J Bähler - Genome biology, 2012 - Springer
Background Gene expression is controlled globally and at multiple levels in response to
environmental stress, but the relationships among these dynamic regulatory changes are …