An evolutionary epigenetic clock in plants

N Yao, Z Zhang, L Yu, R Hazarika, C Yu, H Jang… - Science, 2023 - science.org
Molecular clocks are the basis for dating the divergence between lineages over
macroevolutionary timescales (~ 105 to 108 years). However, classical DNA-based clocks …

Morphological data sets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv model

PA Goloboff, M Pittman, D Pol, X Xu - Systematic Biology, 2019 - academic.oup.com
The Mkv evolutionary model, based on minor modifications to models of molecular
evolution, is being increasingly used to infer phylogenies from discrete morphological data …

Genetic variation in aneuploidy prevalence and tolerance across Saccharomyces cerevisiae lineages

EFC Scopel, J Hose, D Bensasson, AP Gasch - Genetics, 2021 - academic.oup.com
Individuals carrying an aberrant number of chromosomes can vary widely in their expression
of aneuploidy phenotypes. A major unanswered question is the degree to which an …

A phylogeny for the Drosophila montium species group: a model clade for comparative analyses

WR Conner, EK Delaney, MJ Bronski… - Molecular Phylogenetics …, 2021 - Elsevier
The Drosophila montium species group is a clade of 94 named species, closely related to
the model species D. melanogaster. The montium species group is distributed over a broad …

The relative importance of modeling site pattern heterogeneity versus partition-wise heterotachy in phylogenomic inference

HC Wang, E Susko, AJ Roger - Systematic biology, 2019 - academic.oup.com
Large taxa-rich genome-scale data sets are often necessary for resolving ancient
phylogenetic relationships. But accurate phylogenetic inference requires that they are …

A remarkable troglomorphic ant, Yavnella laventa sp. nov.(Hymenoptera: Formicidae: Leptanillinae), identified as the first known worker of Yavnella Kugler by …

ZH Griebenow, M Isaia, M Moradmand - Invertebrate Systematics, 2022 - CSIRO Publishing
The ant subfamily Leptanillinae (Hymenoptera: Formicidae) consists of minute soil-dwelling
species, with several genera within this clade being based solely upon males, including …

Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants

AS Tyszka, EC Bretz, HM Robertson… - Frontiers in Plant …, 2023 - frontiersin.org
Chloroplasts and mitochondria each contain their own genomes, which have historically
been and continue to be important sources of information for inferring the phylogenetic …

Integration of mitogenomic and morphological data disentangles the systematics of Pollenia and establishes a revised phylogenetic hypothesis for the Polleniidae

NP Johnston, M Piwczyński, P Trzeciak… - Systematic …, 2023 - Wiley Online Library
Abstract The Polleniidae (Diptera) are a family of flies best known for species of the genus
Pollenia, which overwinter inside human dwellings. Previously divided across the …

Molecular systematics, higher‐rank classification and Gondwanan origins of Cryptocephalinae leaf beetles

J Gómez‐Zurita, A Cardoso - Zoologica Scripta, 2021 - Wiley Online Library
Abstract With 5,300 species, the Cryptocephalinae is the fourth largest subfamily of the
megadiverse Chrysomelidae beetles. This subfamily currently merges groups that were …

Everglades virus evolution: Genome sequence analysis of the envelope 1 protein reveals recent mutation and divergence in South Florida wetlands

MC Valente, D Prakoso, AY Vittor, EM Blosser… - Virus …, 2022 - academic.oup.com
Everglades virus (EVEV) is a subtype (II) of Venezuelan equine encephalitis virus (VEEV),
endemic in southern Florida, USA. EVEV has caused clinical encephalitis in humans, and …