Regulation by 3′-untranslated regions

C Mayr - Annual review of genetics, 2017 - annualreviews.org
3′-untranslated regions (3′-UTRs) are the noncoding parts of mRNAs. Compared to
yeast, in humans, median 3′-UTR length has expanded approximately tenfold alongside …

Specificity and nonspecificity in RNA–protein interactions

E Jankowsky, ME Harris - Nature reviews Molecular cell biology, 2015 - nature.com
To fully understand the regulation of gene expression, it is critical to quantitatively define
whether and how RNA-binding proteins (RBPs) discriminate between alternative binding …

[PDF][PDF] Overview of refinement procedures within REFMAC5: utilizing data from different sources

O Kovalevskiy, RA Nicholls, F Long… - … Section D: Structural …, 2018 - journals.iucr.org
Refinement is a process that involves bringing into agreement the structural model,
available prior knowledge and experimental data. To achieve this, the refinement procedure …

The cooperative binding of TDP-43 to GU-rich RNA repeats antagonizes TDP-43 aggregation

JC Rengifo-Gonzalez, K El Hage, MJ Clément… - Elife, 2021 - elifesciences.org
TDP-43 is a nuclear RNA-binding protein that forms neuronal cytoplasmic inclusions in two
major neurodegenerative diseases, ALS and FTLD. While the self-assembly of TDP-43 by its …

Structure and function of a bacterial type III-E CRISPR–Cas7-11 complex

G Yu, X Wang, Y Zhang, Q An, Y Wen, X Li, H Yin… - Nature …, 2022 - nature.com
Abstract The type III-E CRISPR–Cas system uses a single multidomain effector called Cas7-
11 (also named gRAMP) to cleave RNA and associate with a caspase-like protease Csx29 …

The DDX6–4E-T interaction mediates translational repression and P-body assembly

A Kamenska, C Simpson, C Vindry… - Nucleic acids …, 2016 - academic.oup.com
Abstract 4E-Transporter binds eIF4E via its consensus sequence YXXXXLΦ, shared with
eIF4G, and is a nucleocytoplasmic shuttling protein found enriched in P-(rocessing) bodies …

UNR/CSDE1 drives a post-transcriptional program to promote melanoma invasion and metastasis

L Wurth, P Papasaikas, D Olmeda, N Bley, GT Calvo… - Cancer cell, 2016 - cell.com
RNA binding proteins (RBPs) modulate cancer progression through poorly understood
mechanisms. Here we show that the RBP UNR/CSDE1 is overexpressed in melanoma …

Intra-and inter-molecular regulation by intrinsically-disordered regions governs PUF protein RNA binding

C Qiu, Z Zhang, RN Wine, ZT Campbell… - Nature …, 2023 - nature.com
PUF proteins are characterized by globular RNA-binding domains. They also interact with
partner proteins that modulate their RNA-binding activities. Caenorhabditis elegans PUF …

Cold-shock domains—abundance, structure, properties, and nucleic-acid binding

U Heinemann, Y Roske - Cancers, 2021 - mdpi.com
Simple Summary Proteins are composed of compact domains, often of known three-
dimensional structure, and natively unstructured polypeptide regions. The abundant cold …

Trans‐acting translational regulatory RNA binding proteins

RF Harvey, TS Smith, T Mulroney… - Wiley …, 2018 - Wiley Online Library
The canonical molecular machinery required for global mRNA translation and its control has
been well defined, with distinct sets of proteins involved in the processes of translation …