The chemical repertoire of natural ribozymes

JA Doudna, TR Cech - Nature, 2002 - nature.com
Although RNA is generally thought to be a passive genetic blueprint, some RNA molecules,
called ribozymes, have intrinsic enzyme-like activity—they can catalyse chemical reactions …

Chemistry and biology of self-cleaving ribozymes

RM Jimenez, JA Polanco, A Lupták - Trends in biochemical sciences, 2015 - cell.com
Self-cleaving ribozymes were discovered 30 years ago, but their biological distribution and
catalytic mechanisms are only beginning to be defined. Each ribozyme family is defined by a …

The catalytic diversity of RNAs

MJ Fedor, JR Williamson - Nature reviews Molecular cell biology, 2005 - nature.com
The natural RNA enzymes catalyse phosphate-group transfer and peptide-bond formation.
Initially, metal ions were proposed to supply the chemical versatility that nucleotides lack. In …

Allosteric cascade of spliceosome activation

DA Brow - Annual review of genetics, 2002 - annualreviews.org
▪ Abstract Introns are removed from precursor messenger RNAs in the cell nucleus by a
large ribonucleoprotein complex called the spliceosome. The spliceosome contains five …

A conformational switch controls hepatitis delta virus ribozyme catalysis

A Ke, K Zhou, F Ding, JHD Cate, JA Doudna - Nature, 2004 - nature.com
Ribozymes enhance chemical reaction rates using many of the same catalytic strategies as
protein enzymes. In the hepatitis delta virus (HDV) ribozyme, site-specific self-cleavage of …

Nucleic acid catalysis: metals, nucleobases, and other cofactors

WL Ward, K Plakos, VJ DeRose - Chemical reviews, 2014 - ACS Publications
The discovery of RNA-catalyzed phosphodiester bond cleavage by Cech and Altman in
1982− 1983 shattered the paradigm of protein-dependent biological catalysis and opened …

Ribozyme speed limits

GM Emilsson, S Nakamura, A Roth, RR Breaker - Rna, 2003 - rnajournal.cshlp.org
The speed at which RNA molecules decompose is a critical determinant of many biological
processes, including those directly involved in the storage and expression of genetic …

In vitro evolution of ribonucleases from expanded genetic alphabets

CA Jerome, S Hoshika, KM Bradley… - Proceedings of the …, 2022 - National Acad Sciences
The ability of nucleic acids to catalyze reactions (as well as store and transmit information) is
important for both basic and applied science, the first in the context of molecular evolution …

Mechanistic considerations for general acid− base catalysis by RNA: Revisiting the mechanism of the hairpin ribozyme

PC Bevilacqua - Biochemistry, 2003 - ACS Publications
Several small ribozymes carry out self-cleavage at a specific phosphodiester bond to yield 2
', 3 '-cyclic phosphate and 5 '-hydroxyl termini. Prior mechanistic and structural studies on the …

Characterization of a common precursor population for dendritic cells

GM del Hoyo, P Martín, HH Vargas, S Ruiz, CF Arias… - Nature, 2002 - nature.com
Dendritic cells (DCs) are essential for the establishment of immune responses against
pathogens and tumour cells, and thus have great potential as tools for vaccination and …