Riboswitches, which are located within certain noncoding RNA region perform functions as
genetic “switches”, regulating when and where genes are expressed in response to certain …

We present a continuous benchmarking approach for the assessment of RNA secondary
structure prediction methods implemented in the CompaRNA web server. As of 3 October …

Introduction The pursuit of novel therapeutic agents for serious diseases such as cancer has
been a global endeavor. Aptamers characteristic of high affinity, programmability, low …

Any method for RNA secondary structure prediction is determined by four ingredients. The
architecture is the choice of features implemented by the model (such as stacked basepairs …

Abstract Motivation: Structured RNAs can be hard to search for as they often are not well
conserved in their primary structure and are local in their genomic or transcriptomic context …

PPfold is a multi-threaded implementation of the Pfold algorithm for RNA secondary
structure prediction. Here we present a new version of PPfold, which extends the …

Obtaining valuable clues for noncoding RNA (ribonucleic acid) subsequences remains a
significant challenge, acknowledging that most of the human genome transcribes into …

The accurate “base pairing” in RNA molecules, which leads to the prediction of RNA
secondary structures, is crucial in order to explain unknown biological operations. Recently …

A distance constrained secondary structural model of the≈ 10 kb RNA genome of the HIV-1
has been predicted but higher-order structures, involving long distance interactions, are …

The observation and analysis of RNA molecules have proved crucial for the understanding
of various processes in nature. Scientists have mined knowledge and drawn conclusions …