The next horizon in precision oncology: Proteogenomics to inform cancer diagnosis and treatment

H Rodriguez, JC Zenklusen, LM Staudt, JH Doroshow… - Cell, 2021 - cell.com
When it comes to precision oncology, proteogenomics may provide better prospects to the
clinical characterization of tumors, help make a more accurate diagnosis of cancer, and …

Onco‐multi‐OMICS approach: a new frontier in cancer research

S Chakraborty, MI Hosen, M Ahmed… - BioMed research …, 2018 - Wiley Online Library
The acquisition of cancer hallmarks requires molecular alterations at multiple levels
including genome, epigenome, transcriptome, proteome, and metabolome. In the past …

The E3 ligase adapter cereblon targets the C-terminal cyclic imide degron

S Ichikawa, HA Flaxman, W Xu, N Vallavoju, HC Lloyd… - Nature, 2022 - nature.com
The ubiquitin E3 ligase substrate adapter cereblon (CRBN) is a target of thalidomide and
lenalidomide, therapeutic agents used in the treatment of haematopoietic malignancies …

A high-stringency blueprint of the human proteome

S Adhikari, EC Nice, EW Deutsch, L Lane… - Nature …, 2020 - nature.com
Abstract The Human Proteome Organization (HUPO) launched the Human Proteome Project
(HPP) in 2010, creating an international framework for global collaboration, data sharing …

Induction of APOBEC3 exacerbates DNA replication stress and chromosomal instability in early breast and lung cancer evolution

S Venkatesan, M Angelova, C Puttick, H Zhai… - Cancer discovery, 2021 - AACR
APOBEC3 enzymes are cytosine deaminases implicated in cancer. Precisely when
APOBEC3 expression is induced during cancer development remains to be defined. Here …

HPV16 and HPV18 genome structure, expression, and post-transcriptional regulation

L Yu, V Majerciak, ZM Zheng - International journal of molecular sciences, 2022 - mdpi.com
Human papillomaviruses (HPV) are a group of small non-enveloped DNA viruses whose
infection causes benign tumors or cancers. HPV16 and HPV18, the two most common high …

Global mapping of cancers: The Cancer Genome Atlas and beyond

C Ganini, I Amelio, R Bertolo, P Bove… - Molecular …, 2021 - Wiley Online Library
Cancer genomes have been explored from the early 2000s through massive exome
sequencing efforts, leading to the publication of The Cancer Genome Atlas in 2013 …

APOBEC3A catalyzes mutation and drives carcinogenesis in vivo

EK Law, R Levin-Klein, MC Jarvis, H Kim… - Journal of Experimental …, 2020 - rupress.org
The APOBEC3 family of antiviral DNA cytosine deaminases is implicated as the second
largest source of mutation in cancer. This mutational process may be a causal driver or …

Novel prognostic clinical factors and biomarkers for outcome prediction in head and neck cancer: a systematic review

V Budach, I Tinhofer - The Lancet Oncology, 2019 - thelancet.com
Current algorithms for the clinical management of patients with squamous cell carcinoma of
the head and neck (HNSCC) are based on a stage-dependent strategy where all patients at …

APOBEC3A is a prominent cytidine deaminase in breast cancer

LM Cortez, AL Brown, MA Dennis, CD Collins… - PLoS …, 2019 - journals.plos.org
APOBEC cytidine deaminases are the second-most prominent source of mutagenesis in
sequenced tumors. Previous studies have proposed that APOBEC3B (A3B) is the major …