Long-range enhancer–promoter contacts in gene expression control

S Schoenfelder, P Fraser - Nature Reviews Genetics, 2019 - nature.com
Spatiotemporal gene expression programmes are orchestrated by transcriptional
enhancers, which are key regulatory DNA elements that engage in physical contacts with …

3D enhancer-promoter interactions and multi-connected hubs: Organizational principles and functional roles

CM Uyehara, E Apostolou - Cell reports, 2023 - cell.com
The spatiotemporal control of gene expression is dependent on the activity of cis-acting
regulatory sequences, called enhancers, which regulate target genes over variable genomic …

Diagnosis and management of Cornelia de Lange syndrome: first international consensus statement

AD Kline, JF Moss, A Selicorni, AM Bisgaard… - Nature Reviews …, 2018 - nature.com
Abstract Cornelia de Lange syndrome (CdLS) is an archetypical genetic syndrome that is
characterized by intellectual disability, well-defined facial features, upper limb anomalies …

Transcriptional elongation control in developmental gene expression, aging, and disease

Y Aoi, A Shilatifard - Molecular cell, 2023 - cell.com
The elongation stage of transcription by RNA polymerase II (RNA Pol II) is central to the
regulation of gene expression in response to developmental and environmental cues in …

[HTML][HTML] Chromatin jets define the properties of cohesin-driven in vivo loop extrusion

Y Guo, E Al-Jibury, R Garcia-Millan, K Ntagiantas… - Molecular Cell, 2022 - cell.com
Complex genomes show intricate organization in three-dimensional (3D) nuclear space.
Current models posit that cohesin extrudes loops to form self-interacting domains delimited …

BRD4 orchestrates genome folding to promote neural crest differentiation

R Linares-Saldana, W Kim, NA Bolar, H Zhang… - Nature …, 2021 - nature.com
Higher-order chromatin structure regulates gene expression, and mutations in proteins
mediating genome folding underlie developmental disorders known as cohesinopathies …

Targeting bromodomain and extraterminal proteins for drug discovery: from current progress to technological development

P Tang, J Zhang, J Liu, CM Chiang… - Journal of medicinal …, 2021 - ACS Publications
Bromodomain and extraterminal (BET) proteins bind acetylated lysine residues in histones
and nonhistone proteins via tandem bromodomains and regulate chromatin dynamics …

3D chromatin architecture and transcription regulation in cancer

S Deng, Y Feng, S Pauklin - Journal of hematology & oncology, 2022 - Springer
Chromatin has distinct three-dimensional (3D) architectures important in key biological
processes, such as cell cycle, replication, differentiation, and transcription regulation. In turn …

Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration

B Lucic, HC Chen, M Kuzman, E Zorita… - Nature …, 2019 - nature.com
HIV-1 recurrently targets active genes and integrates in the proximity of the nuclear pore
compartment in CD4+ T cells. However, the genomic features of these genes and the …

High-sensitive nascent transcript sequencing reveals BRD4-specific control of widespread enhancer and target gene transcription

A Bressin, O Jasnovidova, M Arnold… - Nature …, 2023 - nature.com
Gene transcription by RNA polymerase II (Pol II) is under control of promoters and distal
regulatory elements known as enhancers. Enhancers are themselves transcribed by Pol II …