Nonspecific binding—fundamental concepts and consequences for biosensing applications

A Frutiger, A Tanno, S Hwu, RF Tiefenauer… - Chemical …, 2021 - ACS Publications
Nature achieves differentiation of specific and nonspecific binding in molecular interactions
through precise control of biomolecules in space and time. Artificial systems such as …

Stochastic models of intracellular transport

PC Bressloff, JM Newby - Reviews of Modern Physics, 2013 - APS
The interior of a living cell is a crowded, heterogenuous, fluctuating environment. Hence, a
major challenge in modeling intracellular transport is to analyze stochastic processes within …

[图书][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

[HTML][HTML] Non-Brownian diffusion in lipid membranes: Experiments and simulations

R Metzler, JH Jeon, AG Cherstvy - Biochimica et Biophysica Acta (BBA) …, 2016 - Elsevier
The dynamics of constituents and the surface response of cellular membranes—also in
connection to the binding of various particles and macromolecules to the membrane—are …

From first-passage times of random walks in confinement to geometry-controlled kinetics

O Bénichou, R Voituriez - Physics Reports, 2014 - Elsevier
We present a general theory which allows one to accurately evaluate the mean first-passage
time (FPT) for regular random walks in bounded domains, and its extensions to related first …

Probing the target search of DNA-binding proteins in mammalian cells using TetR as model searcher

D Normanno, L Boudarène, C Dugast-Darzacq… - Nature …, 2015 - nature.com
Many cellular functions rely on DNA-binding proteins finding and associating to specific sites
in the genome. Yet the mechanisms underlying the target search remain poorly understood …

Stochastic mechano-chemical kinetics of molecular motors: a multidisciplinary enterprise from a physicist's perspective

D Chowdhury - Physics Reports, 2013 - Elsevier
A molecular motor is made of either a single macromolecule or a macromolecular complex.
Just like their macroscopic counterparts, molecular motors “transduce” input energy into …

Stochastic switching in biology: from genotype to phenotype

PC Bressloff - Journal of Physics A: Mathematical and …, 2017 - iopscience.iop.org
There has been a resurgence of interest in non-equilibrium stochastic processes in recent
years, driven in part by the observation that the number of molecules (genes, mRNA …

Stochastic resetting by a random amplitude

M Dahlenburg, AV Chechkin, R Schumer, R Metzler - Physical Review E, 2021 - APS
Stochastic resetting, a diffusive process whose amplitude is reset to the origin at random
times, is a vividly studied strategy to optimize encounter dynamics, eg, in chemical reactions …

Distance matters: the impact of gene proximity in bacterial gene regulation

O Pulkkinen, R Metzler - Physical review letters, 2013 - APS
Following recent discoveries of colocalization of downstream-regulating genes in living
cells, the impact of the spatial distance between such genes on the kinetics of gene product …