Recombination in viruses: mechanisms, methods of study, and evolutionary consequences

M Pérez-Losada, M Arenas, JC Galán, F Palero… - Infection, Genetics and …, 2015 - Elsevier
Recombination is a pervasive process generating diversity in most viruses. It joins variants
that arise independently within the same molecule, creating new opportunities for viruses to …

Eukaryotic circular rep-encoding single-stranded DNA (CRESS DNA) viruses: ubiquitous viruses with small genomes and a diverse host range

L Zhao, K Rosario, M Breitbart, S Duffy - Advances in virus research, 2019 - Elsevier
While single-stranded DNA (ssDNA) was once thought to be a relatively rare genomic
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …

[HTML][HTML] Global genome analysis reveals a vast and dynamic anellovirus landscape within the human virome

CA Arze, S Springer, G Dudas, S Patel… - Cell Host & Microbe, 2021 - cell.com
Anelloviruses are a ubiquitous component of healthy human viromes and remain highly
prevalent after being acquired early in life. The full extent of" anellome" diversity and its …

A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics

K Rosario, S Duffy, M Breitbart - Archives of virology, 2012 - Springer
Despite their small size and limited protein-coding capacity, the rapid evolution rates of
single-stranded DNA (ssDNA) viruses have led to their emergence as serious plant and …

Virus diversity and interactions with hosts in deep-sea hydrothermal vents

R Cheng, X Li, L Jiang, L Gong, C Geslin, Z Shao - Microbiome, 2022 - Springer
Background The deep sea harbors many viruses, yet their diversity and interactions with
hosts in hydrothermal ecosystems are largely unknown. Here, we analyzed the viral …

Recombination as a motor of host switches and virus emergence: geminiviruses as case studies

P Lefeuvre, E Moriones - Current Opinion in Virology, 2015 - Elsevier
Highlights•Recombination is inherent to the geminivirus replication process.•Recombination
is adaptive in the family, allowing for host shifts and increased host ranges.•Recombination …

Virus–host coevolution with a focus on animal and human DNA viruses

GL Kaján, A Doszpoly, ZL Tarján, MZ Vidovszky… - Journal of molecular …, 2020 - Springer
Viruses have been infecting their host cells since the dawn of life, and this extremely long-
term coevolution gave rise to some surprising consequences for the entire tree of life. It is …

Evolution of pathogen tolerance and emerging infections: A missing experimental paradigm

S Seal, G Dharmarajan, I Khan - Elife, 2021 - elifesciences.org
Researchers worldwide are repeatedly warning us against future zoonotic diseases
resulting from humankind's insurgence into natural ecosystems. The same zoonotic …

Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering

AYL Sim, J Lipfert, D Herschlag, S Doniach - Physical Review E—Statistical …, 2012 - APS
Short single-stranded nucleic acids are ubiquitous in biological processes; understanding
their physical properties provides insights to nucleic acid folding and dynamics. We used …

Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family Genomoviridae

A Varsani, M Krupovic - Virus evolution, 2017 - academic.oup.com
With the advent of metagenomics approaches, a large diversity of known and unknown
viruses has been identified in various types of environmental, plant, and animal samples …