Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer

E Lerner, T Cordes, A Ingargiola, Y Alhadid, SY Chung… - Science, 2018 - science.org
BACKGROUND Biomolecular mechanisms are typically inferred from static structural
“snapshots” obtained by x-ray crystallography, nuclear magnetic resonance (NMR) …

Single-molecule FRET methods to study the dynamics of proteins at work

H Mazal, G Haran - Current opinion in biomedical engineering, 2019 - Elsevier
Feynman commented that “Everything that living things do can be understood in terms of the
jiggling and wiggling of atoms”. Proteins can jiggle and wiggle large structural elements …

Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins

G Agam, C Gebhardt, M Popara, R Mächtel, J Folz… - Nature …, 2023 - nature.com
Single-molecule Förster-resonance energy transfer (smFRET) experiments allow the study
of biomolecular structure and dynamics in vitro and in vivo. We performed an international …

A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories

M Götz, A Barth, SSR Bohr, R Börner, J Chen… - Nature …, 2022 - nature.com
Single-molecule FRET (smFRET) is a versatile technique to study the dynamics and function
of biomolecules since it makes nanoscale movements detectable as fluorescence signals …

Fluorescence resonance energy transfer at the single-molecule level

T Ha, J Fei, S Schmid, NK Lee… - Nature Reviews …, 2024 - nature.com
Fluorescence resonance energy transfer (FRET) is a powerful spectroscopic method for
measuring distances in the 2–8 nm range. Often, conformational changes and molecular …

FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices

E Lerner, A Barth, J Hendrix, B Ambrose, V Birkedal… - Elife, 2021 - elifesciences.org
Single-molecule FRET (smFRET) has become a mainstream technique for studying
biomolecular structural dynamics. The rapid and wide adoption of smFRET experiments by …

Fast protein folding is governed by memory-dependent friction

BA Dalton, C Ayaz, H Kiefer, A Klimek… - Proceedings of the …, 2023 - National Acad Sciences
When described by a low-dimensional reaction coordinate, the folding rates of most proteins
are determined by a subtle interplay between free-energy barriers, which separate folded …

Diffusion of a disordered protein on its folded ligand

F Wiggers, S Wohl, A Dubovetskyi… - Proceedings of the …, 2021 - National Acad Sciences
Intrinsically disordered proteins often form dynamic complexes with their ligands. Yet, the
speed and amplitude of these motions are hidden in classical binding kinetics. Here, we …

Direct observation of ultrafast large-scale dynamics of an enzyme under turnover conditions

HY Aviram, M Pirchi, H Mazal, Y Barak… - Proceedings of the …, 2018 - National Acad Sciences
The functional cycle of many proteins involves large-scale motions of domains and subunits.
The relation between conformational dynamics and the chemical steps of enzymes remains …

Dynamic stability of Sgt2 enables selective and privileged client handover in a chaperone triad

H Cho, Y Liu, SY Chung, S Chandrasekar… - Nature …, 2024 - nature.com
Membrane protein biogenesis poses acute challenges to protein homeostasis, and how they
are selectively escorted to the target membrane is not well understood. Here we address this …