COMPASS and SWI/SNF complexes in development and disease

BK Cenik, A Shilatifard - Nature Reviews Genetics, 2021 - nature.com
Abstract The Trithorax group (TrxG) of proteins is a large family of epigenetic regulators that
form multiprotein complexes to counteract repressive developmental gene expression …

Kabuki syndrome—clinical review with molecular aspects

S Boniel, K Szymańska, R Śmigiel, K Szczałuba - Genes, 2021 - mdpi.com
Kabuki syndrome (KS) is a rare developmental disorder principally comprised of
developmental delay, hypotonia and a clearly defined dysmorphism: elongation of the …

Modular, efficient and constant-memory single-cell RNA-seq preprocessing

P Melsted, AS Booeshaghi, L Liu, F Gao, L Lu… - Nature …, 2021 - nature.com
We describe a workflow for preprocessing of single-cell RNA-sequencing data that balances
efficiency and accuracy. Our workflow is based on the kallisto and bustools programs, and is …

The genomics and genetics of oxygen homeostasis

GL Semenza - Annual review of genomics and human genetics, 2020 - annualreviews.org
Human survival is dependent upon the continuous delivery of O2 to each cell in the body in
sufficient amounts to meet metabolic requirements, primarily for ATP generation by oxidative …

Mendelian disorders of the epigenetic machinery: postnatal malleability and therapeutic prospects

JA Fahrner, HT Bjornsson - Human Molecular Genetics, 2019 - academic.oup.com
The epigenetic machinery in conjunction with the transcriptional machinery is responsible
for maintaining genome-wide chromatin states and dynamically regulating gene expression …

Universal prediction of cell-cycle position using transfer learning

SC Zheng, G Stein-O'Brien, JJ Augustin, J Slosberg… - Genome biology, 2022 - Springer
Background The cell cycle is a highly conserved, continuous process which controls faithful
replication and division of cells. Single-cell technologies have enabled increasingly precise …

KMT2D deficiency promotes myeloid leukemias which is vulnerable to ribosome biogenesis inhibition

J Xu, A Zhong, S Zhang, M Chen, L Zhang… - Advanced …, 2023 - Wiley Online Library
Abstract KMT2C and KMT2D are the most frequently mutated epigenetic genes in human
cancers. While KMT2C is identified as a tumor suppressor in acute myeloid leukemia (AML) …

[HTML][HTML] A mouse model of Weaver syndrome displays overgrowth and excess osteogenesis reversible with KDM6A/6B inhibition

CW Gao, WY Lin, RC Riddle, P Kushwaha, L Boukas… - JCI insight, 2024 - ncbi.nlm.nih.gov
Weaver syndrome is a Mendelian disorder of the epigenetic machinery (MDEM) caused by
germline pathogenic variants in EZH2, which encodes the predominant H3K27 …

The omics era: a nexus of untapped potential for Mendelian chromatinopathies

AA Nava, VA Arboleda - Human Genetics, 2024 - Springer
The OMICs cascade describes the hierarchical flow of information through biological
systems. The epigenome sits at the apex of the cascade, thereby regulating the RNA and …

Somatic mutations alter the differentiation outcomes of iPSC-derived neurons

P Puigdevall, J Jerber, P Danecek, S Castellano… - Cell genomics, 2023 - cell.com
The use of induced pluripotent stem cells (iPSC) as models for development and human
disease has enabled the study of otherwise inaccessible tissues. A remaining challenge in …