New developments in the biology of fibroblast growth factors

DM Ornitz, N Itoh - WIREs mechanisms of disease, 2022 - Wiley Online Library
The fibroblast growth factor (FGF) family is composed of 18 secreted signaling proteins
consisting of canonical FGFs and endocrine FGFs that activate four receptor tyrosine …

A brief review of vertebrate sex evolution with a pledge for integrative research: towards 'sexomics'

M Stöck, L Kratochvíl, H Kuhl… - … of the Royal …, 2021 - royalsocietypublishing.org
Triggers and biological processes controlling male or female gonadal differentiation vary in
vertebrates, with sex determination (SD) governed by environmental factors or simple to …

The little skate genome and the evolutionary emergence of wing-like fins

F Marlétaz, E de la Calle-Mustienes, RD Acemel… - Nature, 2023 - nature.com
Skates are cartilaginous fish whose body plan features enlarged wing-like pectoral fins,
enabling them to thrive in benthic environments,. However, the molecular underpinnings of …

Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes

AR Ringel, Q Szabo, AM Chiariello, K Chudzik… - Cell, 2022 - cell.com
Regulatory landscapes drive complex developmental gene expression, but it remains
unclear how their integrity is maintained when incorporating novel genes and functions …

Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom

M Muffato, A Louis, NTT Nguyen, J Lucas… - Nature Ecology & …, 2023 - nature.com
Ancestral sequence reconstruction is a fundamental aspect of molecular evolution studies
and can trace small-scale sequence modifications through the evolution of genomes and …

Evolution of 3D chromatin organization at different scales

RD Acemel, DG Lupiáñez - Current opinion in genetics & development, 2023 - Elsevier
Highlights•Chromatin folding into topologically associated domains (TADs) is pervasive
across animal groups.•TADs are plastic entities composed of genomic strata from different …

Pan-3D genome analysis reveals structural and functional differentiation of soybean genomes

L Ni, Y Liu, X Ma, T Liu, X Yang, Z Wang, Q Liang, S Liu… - Genome Biology, 2023 - Springer
Background High-order chromatin structure plays important roles in gene regulation.
However, the diversity of the three-dimensional (3D) genome across plant accessions are …

Function and evolution of the loop extrusion machinery in animals

E Kabirova, A Nurislamov, A Shadskiy… - International Journal of …, 2023 - mdpi.com
Structural maintenance of chromosomes (SMC) complexes are essential proteins found in
genomes of all cellular organisms. Essential functions of these proteins, such as mitotic …

Multiplex generation and single-cell analysis of structural variants in mammalian genomes

S Pinglay, JB Lalanne, RM Daza, S Kottapalli… - Science, 2025 - science.org
Studying the functional consequences of structural variants (SVs) in mammalian genomes is
challenging because (i) SVs arise much less commonly than single-nucleotide variants or …

Ovotestes suggest cryptic genetic influence in a reptile model for temperature-dependent sex determination

SL Whiteley, A Georges… - … of the Royal …, 2021 - royalsocietypublishing.org
Sex determination and differentiation in reptiles is complex. Temperature-dependent sex
determination (TSD), genetic sex determination (GSD) and the interaction of both …