Artificial intelligence and machine learning‐aided drug discovery in central nervous system diseases: State‐of‐the‐arts and future directions

S Vatansever, A Schlessinger, D Wacker… - Medicinal research …, 2021 - Wiley Online Library
Neurological disorders significantly outnumber diseases in other therapeutic areas.
However, developing drugs for central nervous system (CNS) disorders remains the most …

A perspective on explanations of molecular prediction models

GP Wellawatte, HA Gandhi, A Seshadri… - Journal of Chemical …, 2023 - ACS Publications
Chemists can be skeptical in using deep learning (DL) in decision making, due to the lack of
interpretability in “black-box” models. Explainable artificial intelligence (XAI) is a branch of …

Can graph neural networks count substructures?

Z Chen, L Chen, S Villar… - Advances in neural …, 2020 - proceedings.neurips.cc
The ability to detect and count certain substructures in graphs is important for solving many
tasks on graph-structured data, especially in the contexts of computational chemistry and …

Benchmarking machine learning models for polymer informatics: an example of glass transition temperature

L Tao, V Varshney, Y Li - Journal of Chemical Information and …, 2021 - ACS Publications
In the field of polymer informatics, utilizing machine learning (ML) techniques to evaluate the
glass transition temperature T g and other properties of polymers has attracted extensive …

Evaluating attribution for graph neural networks

B Sanchez-Lengeling, J Wei, B Lee… - Advances in neural …, 2020 - proceedings.neurips.cc
Interpretability of machine learning models is critical to scientific understanding, AI safety, as
well as debugging. Attribution is one approach to interpretability, which highlights input …

Deep learning in drug target interaction prediction: current and future perspectives

K Abbasi, P Razzaghi, A Poso… - Current Medicinal …, 2021 - ingentaconnect.com
Drug-target Interactions (DTIs) prediction plays a central role in drug discovery.
Computational methods in DTIs prediction have gained more attention because carrying out …

pBRICS: a novel fragmentation method for explainable property prediction of drug-like small molecules

SR Vangala, SR Krishnan, N Bung… - Journal of Chemical …, 2023 - ACS Publications
Generative artificial intelligence algorithms have shown to be successful in exploring large
chemical spaces and designing novel and diverse molecules. There has been considerable …

Graph neural networks with molecular segmentation for property prediction and structure–property relationship discovery

Z Chen, D Li, M Liu, J Liu - Computers & Chemical Engineering, 2023 - Elsevier
Graph neural networks (GNNs) have been widely used for predicting properties and
discovering structure–property relationships in chemistry and drug discovery. However …

An interpretable machine learning model for selectivity of small-molecules against homologous protein family

SR Vangala, N Bung, SR Krishnan… - Future Medicinal …, 2022 - Taylor & Francis
Aim: In the early stages of drug discovery, various experimental and computational methods
are used to measure the specificity of small molecules against a target protein. The …

Robust internal representations for domain generalization

M Rostami - AI Magazine, 2023 - Wiley Online Library
This paper, which is part of the New Faculty Highlights Invited Speaker Program of AAAI'23,
serves as a comprehensive survey of my research in transfer learning by utilizing …