The power of using functional fMRI on small rodents to study brain pharmacology and disease

E Jonckers, D Shah, J Hamaide, M Verhoye… - Frontiers in …, 2015 - frontiersin.org
Functional magnetic resonance imaging (fMRI) is an excellent tool to study the effect of
pharmacological modulations on brain function in a non-invasive and longitudinal manner …

Cell type-specific transcriptomics reveals that mutant huntingtin leads to mitochondrial RNA release and neuronal innate immune activation

H Lee, RJ Fenster, SS Pineda, WS Gibbs… - Neuron, 2020 - cell.com
The mechanisms by which mutant huntingtin (mHTT) leads to neuronal cell death in
Huntington's disease (HD) are not fully understood. To gain new molecular insights, we …

[HTML][HTML] Imaging patients with psychosis and a mouse model establishes a spreading pattern of hippocampal dysfunction and implicates glutamate as a driver

SA Schobel, NH Chaudhury, UA Khan, B Paniagua… - Neuron, 2013 - cell.com
The hippocampus in schizophrenia is characterized by both hypermetabolism and reduced
size. It remains unknown whether these abnormalities are mechanistically linked. Here we …

A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex

JFP Ullmann, C Watson, AL Janke, ND Kurniawan… - Neuroimage, 2013 - Elsevier
The neocortex is the largest component of the mammalian cerebral cortex. It integrates
sensory inputs with experiences and memory to produce sophisticated responses to an …

[HTML][HTML] Magnetic resonance imaging of Huntington's disease: preparing for clinical trials

S Kloeppel, SM Henley, NZ Hobbs, RC Wolf… - Neuroscience, 2009 - Elsevier
The known genetic mutation causing Huntington's disease (HD) makes this disease an
important model to study links between gene and brain function. An autosomal dominant …

Estrogen receptor beta in astrocytes modulates cognitive function in mid-age female mice

N Itoh, Y Itoh, CE Meyer, TT Suen… - Nature …, 2023 - nature.com
Menopause is associated with cognitive deficits and brain atrophy, but the brain region and
cell-specific mechanisms are not fully understood. Here, we identify a sex hormone by age …

An in vivo MRI Template Set for Morphometry, Tissue Segmentation, and fMRI Localization in Rats

PA Valdés-Hernández, A Sumiyoshi… - Frontiers in …, 2011 - frontiersin.org
Over the last decade, several papers have focused on the construction of highly detailed
mouse high field magnetic resonance image (MRI) templates via non-linear registration to …

Voxel-based morphometry predicts shifts in dendritic spine density and morphology with auditory fear conditioning

OP Keifer Jr, RC Hurt, DA Gutman, SD Keilholz… - Nature …, 2015 - nature.com
Neuroimaging has provided compelling data about the brain. Yet the underlying
mechanisms of many neuroimaging techniques have not been elucidated. Here we report a …

[HTML][HTML] Baicalin ameliorates neuropathology in repeated cerebral ischemia-reperfusion injury model mice by remodeling the gut microbiota

J Liu, T Zhang, Y Wang, C Si, X Wang, RT Wang… - Aging (Albany …, 2020 - ncbi.nlm.nih.gov
We investigated the neuroprotective effects of baicalin and the role of gut microbiota in a
mouse model of cerebral ischemia-reperfusion injury. Repeated cerebral ischemia …

Robust automatic rodent brain extraction using 3-D pulse-coupled neural networks (PCNN)

N Chou, J Wu, JB Bingren, A Qiu… - IEEE Transactions on …, 2011 - ieeexplore.ieee.org
Brain extraction is an important preprocessing step for further processing (eg, registration
and morphometric analysis) of brain MRI data. Due to the operator-dependent and time …