Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers

L Wratten, A Wilm, J Göke - Nature methods, 2021 - nature.com
The rapid growth of high-throughput technologies has transformed biomedical research.
With the increasing amount and complexity of data, scalability and reproducibility have …

[HTML][HTML] A comprehensive review and conceptual framework for cloud computing adoption in bioinformatics

BH Banimfreg - Healthcare Analytics, 2023 - Elsevier
The healthcare industry generates enormous amounts of data, particularly in genomics,
which require effective handling, storage, and analysis. Cloud computing offers a promising …

Imaging intact human organs with local resolution of cellular structures using hierarchical phase-contrast tomography

CL Walsh, P Tafforeau, WL Wagner, DJ Jafree… - Nature …, 2021 - nature.com
Imaging intact human organs from the organ to the cellular scale in three dimensions is a
goal of biomedical imaging. To meet this challenge, we developed hierarchical phase …

Pan-cancer analysis of whole genomes

Nature, 2020 - nature.com
Cancer is driven by genetic change, and the advent of massively parallel sequencing has
enabled systematic documentation of this variation at the whole-genome scale,–. Here we …

[HTML][HTML] Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants

M Garcia, S Juhos, M Larsson, PI Olason… - …, 2020 - ncbi.nlm.nih.gov
Whole-genome sequencing (WGS) is a fundamental technology for research to advance
precision medicine, but the limited availability of portable and user-friendly workflows for …

CCPA: cloud-based, self-learning modules for consensus pathway analysis using GO, KEGG and Reactome

H Nguyen, VD Pham, H Nguyen, B Tran… - Briefings in …, 2024 - academic.oup.com
This manuscript describes the development of a resource module that is part of a learning
platform named 'NIGMS Sandbox for Cloud-based Learning'(https://github …

Comprehensive fundamental somatic variant calling and quality management strategies for human cancer genomes

X He, S Chen, R Li, X Han, Z He, D Yuan… - Briefings in …, 2021 - academic.oup.com
Next-generation sequencing (NGS) technology has revolutionised human cancer research,
particularly via detection of genomic variants with its ultra-high-throughput sequencing and …

Advancements in brain-machine interfaces for application in the metaverse

Y Liu, R Liu, J Ge, Y Wang - Frontiers in Neuroscience, 2024 - frontiersin.org
In recent years, with the shift of focus in metaverse research toward content exchange and
social interaction, breaking through the current bottleneck of audio-visual media interaction …

[HTML][HTML] Multiscale three-dimensional imaging of intact human organs down to the cellular scale using hierarchical phase-contrast tomography.

C Walsh, P Tafforeau, WL Wagner, DJ Jafree, A Bellier… - biorxiv, 2021 - ncbi.nlm.nih.gov
Human organs are complex, three-dimensional and multiscale systems. Spatially mapping
the human body down through its hierarchy, from entire organs to their individual functional …

An Innovative Cloud Computing for Medical Laboratory Data Storage and Analytics

NS Etukudoh, UM Obeta, OR Ejinaka… - Medical Robotics and AI …, 2024 - igi-global.com
This chapter carried out a scoping review on cloud computing and its innovative possibilities
in the use and application in medical laboratory services. While cloud computing offers …