Comparison of iSeq and MiSeq as the two platforms for 16S rRNA sequencing in the study of the gut of rat microbiome
D Salamon, B Zapała, A Krawczyk… - Applied Microbiology …, 2022 - Springer
Amplicon-based next-generation sequencing (NGS) of the 16S ribosomal RNA (16S)
regions is a culture-free method used to identify and analyze Procaryota occurring within a …
regions is a culture-free method used to identify and analyze Procaryota occurring within a …
Reference-free plant disease detection using machine learning and long-read metagenomic sequencing
Surveillance for early disease detection is crucial to reduce the threat of plant diseases to
food security. Metagenomic sequencing and taxonomic classification have recently been …
food security. Metagenomic sequencing and taxonomic classification have recently been …
Recent research accomplishments on early detection of Xylella fastidiosa outbreaks in the Mediterranean Basin
Xylella fastidiosa is a major transboundary plant pest, causing severe socioeconomic
impacts. Development of preventive strategies and methods for surveillance, early detection …
impacts. Development of preventive strategies and methods for surveillance, early detection …
Century-old herbarium specimen provides insights into Pierce's disease of grapevines emergence in the Americas
MA Donegan, AK Kahn, N Becker, AC Siri, PE Campos… - Current Biology, 2025 - cell.com
Fossils and other preserved specimens are integral for informing timing and evolutionary
history in every biological system. By isolating a plant pathogen genome from herbarium …
history in every biological system. By isolating a plant pathogen genome from herbarium …
Concept note: Toward metagenomic sequencing for rapid, sensitive, and accurate detection of bacterial pathogens in potato seed production
V Roman-Reyna, R Rioux, B Babler, T Klass… - PhytoFrontiers …, 2023 - Am Phytopath Society
Disease-free planting stocks and formal certification systems are critical for the profitable
production of vegetatively propagated crops. Propagation through seed tubers is the …
production of vegetatively propagated crops. Propagation through seed tubers is the …
Live tracking of a plant pathogen outbreak reveals rapid and successive, multidecade plasmid reduction
V Roman-Reyna, A Sharma, H Toth, Z Konkel… - Msystems, 2024 - Am Soc Microbiol
Quickly understanding the genomic changes that lead to pathogen emergence is necessary
to launch mitigation efforts and reduce harm. In this study, we tracked in real time a 2022 …
to launch mitigation efforts and reduce harm. In this study, we tracked in real time a 2022 …
A Survey of Xylella fastidiosa in the US State of Virginia Reveals Wide Distribution of Both Subspecies fastidiosa and multiplex in Grapevine
S Abdelrazek, E Bush, C Oliver, H Liu… - …, 2024 - Am Phytopath Society
Global travel and trade in combination with climate change are expanding the geographic
distribution of plant pathogens. The bacterium Xylella fastidiosa is a prime example. Native …
distribution of plant pathogens. The bacterium Xylella fastidiosa is a prime example. Native …
Draft Genome Sequence Resource of Xylella fastidiosa Strain Alm_Lz_1 Associated with a New Outbreak in Lazio, Italy
A Giampetruzzi, G Loconsole, S Zicca… - …, 2023 - Am Phytopath Society
In November 2021, in the framework of the annual surveillance program implemented in all
European Union countries, an outbreak of Xylella fastidiosa was intercepted in the Italian …
European Union countries, an outbreak of Xylella fastidiosa was intercepted in the Italian …
Evaluation of Metabarcoding Methods for Plant Disease Surveillance
Metabarcoding holds great potential for general plant pathogen surveillance by providing an
untargeted profile of the host microbiome. However, the standard marker utilized for …
untargeted profile of the host microbiome. However, the standard marker utilized for …