Single-molecule analysis and engineering of DNA motors

S Mohapatra, CT Lin, XA Feng, A Basu, T Ha - Chemical reviews, 2019 - ACS Publications
Molecular motors are diverse enzymes that transduce chemical energy into mechanical
work and, in doing so, perform critical cellular functions such as DNA replication and …

Bacterial replication, transcription and translation: mechanistic insights from single-molecule biochemical studies

A Robinson, AM Van Oijen - Nature Reviews Microbiology, 2013 - nature.com
Decades of research have resulted in a remarkably detailed understanding of the molecular
mechanisms of bacterial DNA replication, transcription and translation. Our understanding of …

[HTML][HTML] Independent and stochastic action of DNA polymerases in the replisome

JE Graham, KJ Marians, SC Kowalczykowski - Cell, 2017 - cell.com
It has been assumed that DNA synthesis by the leading-and lagging-strand polymerases in
the replisome must be coordinated to avoid the formation of significant gaps in the nascent …

Frequent exchange of the DNA polymerase during bacterial chromosome replication

TR Beattie, N Kapadia, E Nicolas, S Uphoff… - Elife, 2017 - elifesciences.org
The replisome is a multiprotein machine that carries out DNA replication. In Escherichia coli,
a single pair of replisomes is responsible for duplicating the entire 4.6 Mbp circular …

Single-molecule visualization of fast polymerase turnover in the bacterial replisome

JS Lewis, LM Spenkelink, S Jergic, EA Wood… - Elife, 2017 - elifesciences.org
The Escherichia coli DNA replication machinery has been used as a road map to uncover
design rules that enable DNA duplication with high efficiency and fidelity. Although the …

RecF protein targeting to post-replication (daughter strand) gaps II: recF interaction with replisomes

C Henry, G Kaur, ME Cherry, SS Henrikus… - Nucleic Acids …, 2023 - academic.oup.com
Abstract The bacterial RecF, RecO, and RecR proteins are an epistasis group involved in
loading RecA protein into post-replication gaps. However, the targeting mechanism that …

Nuclease dead Cas9 is a programmable roadblock for DNA replication

KS Whinn, G Kaur, JS Lewis, GD Schauer… - Scientific reports, 2019 - nature.com
Limited experimental tools are available to study the consequences of collisions between
DNA-bound molecular machines. Here, we repurpose a catalytically inactivated Cas9 …

Single-molecule visualization of stalled replication-fork rescue by the Escherichia coli Rep helicase

KS Whinn, ZQ Xu, S Jergic, N Sharma… - Nucleic acids …, 2023 - academic.oup.com
Genome duplication occurs while the template DNA is bound by numerous DNA-binding
proteins. Each of these proteins act as potential roadblocks to the replication fork and can …

The E. coli DNA replication fork

JS Lewis, S Jergic, NE Dixon - The Enzymes, 2016 - Elsevier
DNA replication in Escherichia coli initiates at oriC, the origin of replication and proceeds
bidirectionally, resulting in two replication forks that travel in opposite directions from the …

Simultaneous real-time imaging of leading and lagging strand synthesis reveals the coordination dynamics of single replisomes

KE Duderstadt, HJ Geertsema, SA Stratmann… - Molecular cell, 2016 - cell.com
The molecular machinery responsible for DNA replication, the replisome, must efficiently
coordinate DNA unwinding with priming and synthesis to complete duplication of both …