Sequencing pools of individuals—mining genome-wide polymorphism data without big funding

C Schlötterer, R Tobler, R Kofler, V Nolte - Nature Reviews Genetics, 2014 - nature.com
The analysis of polymorphism data is becoming increasingly important as a complementary
tool to classical genetic analyses. Nevertheless, despite plunging sequencing costs …

Defining functional DNA elements in the human genome

M Kellis, B Wold, MP Snyder… - Proceedings of the …, 2014 - National Acad Sciences
With the completion of the human genome sequence, attention turned to identifying and
annotating its functional DNA elements. As a complement to genetic and comparative …

Genetics on the Fly: A Primer on the Drosophila Model System

KG Hales, CA Korey, AM Larracuente, DM Roberts - Genetics, 2015 - academic.oup.com
Fruit flies of the genus Drosophila have been an attractive and effective genetic model
organism since Thomas Hunt Morgan and colleagues made seminal discoveries with them …

Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence

PJ Wittkopp, G Kalay - Nature Reviews Genetics, 2012 - nature.com
Cis-regulatory sequences, such as enhancers and promoters, control development and
physiology by regulating gene expression. Mutations that affect the function of these …

Population genomics of rapid adaptation by soft selective sweeps

PW Messer, DA Petrov - Trends in ecology & evolution, 2013 - cell.com
Organisms can often adapt surprisingly quickly to evolutionary challenges, such as the
application of pesticides or antibiotics, suggesting an abundant supply of adaptive genetic …

The loci of repeated evolution: a catalog of genetic hotspots of phenotypic variation

A Martin, V Orgogozo - Evolution, 2013 - academic.oup.com
What is the nature of the genetic changes underlying phenotypic evolution? We have
catalogued 1008 alleles described in the literature that cause phenotypic differences among …

The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation

JK Pritchard, JK Pickrell, G Coop - Current biology, 2010 - cell.com
There has long been interest in understanding the genetic basis of human adaptation. To
what extent are phenotypic differences among human populations driven by natural …

[HTML][HTML] Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution

SB Carroll - Cell, 2008 - cell.com
Biologists have long sought to understand which genes and what kinds of changes in their
sequences are responsible for the evolution of morphological diversity. Here, I outline eight …

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

YF Chan, ME Marks, FC Jones, G Villarreal Jr… - science, 2010 - science.org
The molecular mechanisms underlying major phenotypic changes that have evolved
repeatedly in nature are generally unknown. Pelvic loss in different natural populations of …

Selection-driven trait loss in independently evolved cavefish populations

RL Moran, EJ Richards, CP Ornelas-García… - Nature …, 2023 - nature.com
Laboratory studies have demonstrated that a single phenotype can be produced by many
different genotypes; however, in natural systems, it is frequently found that phenotypic …