Ecophylogenetics redux

TJ Davies - Ecology Letters, 2021 - Wiley Online Library
Species' evolutionary histories shape their present‐day ecologies, but the integration of
phylogenetic approaches in ecology has had a contentious history. The field of …

Inferring community assembly processes from macroscopic patterns using dynamic eco‐evolutionary models and Approximate Bayesian Computation (ABC)

M Pontarp, Å Brännström… - Methods in Ecology and …, 2019 - Wiley Online Library
Statistical techniques exist for inferring community assembly processes from community
patterns. Habitat filtering, competition, and biogeographical effects have, for example, been …

Clade diversification dynamics and the biotic and abiotic controls of speciation and extinction rates

R Aguilée, F Gascuel, A Lambert, R Ferriere - Nature communications, 2018 - nature.com
How ecological interactions, genetic processes, and environmental variability jointly shape
the evolution of species diversity remains a challenging problem in biology. We developed …

The origin of species richness patterns along environmental gradients: uniting explanations based on time, diversification rate and carrying capacity

M Pontarp, JJ Wiens - Journal of Biogeography, 2017 - Wiley Online Library
Aims Patterns of species richness, such as the remarkable biodiversity of tropical regions,
have been documented and studied for centuries. However, their underlying evolutionary …

Using functional diversity patterns to explore metacommunity dynamics: a framework for understanding local and regional influences on community structure

MJ Spasojevic, S Copeland, KN Suding - Ecography, 2014 - Wiley Online Library
The metacommunity concept, describing how local and regional scale processes interact to
structure communities, has been successfully applied to patterns of taxonomic diversity …

Principles of niche expansion

H Sjödin, J Ripa, P Lundberg - Proceedings of the …, 2018 - royalsocietypublishing.org
Niche expansion is attained by adaptations in two generalized phenotypical traits—niche
position and niche width. This gives room for a wide range of conceptual ways of niche …

Branching patterns in phylogenies cannot distinguish diversity-dependent diversification from time-dependent diversification

T Pannetier, C Martinez, L Bunnefeld, RS Etienne - Evolution, 2021 - academic.oup.com
One of the primary goals of macroevolutionary biology has been to explain general trends in
long-term diversity patterns, including whether such patterns correspond to an upscaling of …

How ecology and landscape dynamics shape phylogenetic trees

F Gascuel, R Ferrière, R Aguilée… - Systematic biology, 2015 - academic.oup.com
Whether biotic or abiotic factors are the dominant drivers of clade diversification is a long-
standing question in evolutionary biology. The ubiquitous patterns of phylogenetic …

Ecological opportunity and predator–prey interactions: linking eco-evolutionary processes and diversification in adaptive radiations

M Pontarp, OL Petchey - Proceedings of the Royal …, 2018 - royalsocietypublishing.org
Much of life's diversity has arisen through ecological opportunity and adaptive radiations, but
the mechanistic underpinning of such diversification is not fully understood. Competition and …

Ecological opportunity and adaptive radiations reveal eco-evolutionary perspectives on community structure in competitive communities

M Pontarp - Scientific reports, 2021 - nature.com
It is well known that ecological and evolutionary processes act in concert while shaping
biological communities. Diversification can, for example, arise through ecological …