MSA-GPU: exact multiple sequence alignment using GPU
D Sundfeld, ACMA de Melo - Brazilian Symposium on Bioinformatics, 2013 - Springer
In this paper, we propose and evaluate MSA-GPU, a solution to implement the exact Multiple
Sequence Alignment algorithm in Graphics Processing Units (GPUs). In our solution, we use …
Sequence Alignment algorithm in Graphics Processing Units (GPUs). In our solution, we use …
Dynamic programming algorithms for discovery of antibiotic resistance in microbial genomes
M Helal, V Sintchenko - arXiv preprint arXiv:2311.17538, 2023 - arxiv.org
The translation of comparative genomics into clinical decision support tools often depends
on the quality of sequence alignments. However, currently used methods of multiple …
on the quality of sequence alignments. However, currently used methods of multiple …
Estratégia paralela exata para o alinhamento múlltiplo de sequências biológicas utilizando Unidades de Processamento Gráfico (GPU)
DS Lima - 2013 - realp.unb.br
O alinhamento múltiplo de sequências biológicas é um problema muito importante em
Biologia Molecular, pois permite que sejam detectadas similaridades e diferenças entre um …
Biologia Molecular, pois permite que sejam detectadas similaridades e diferenças entre um …
Indexing and partitioning schemes for distributed tensor computing with application to multiple sequence alignment
M Helal - 2009 - unsworks.unsw.edu.au
This thesis investigates indexing and partitioning schemes for high dimensional scientific
computational problems. Building on the foundation offered by Mathematics of Arrays (MoA) …
computational problems. Building on the foundation offered by Mathematics of Arrays (MoA) …