Immunoglobulin germline gene variation and its impact on human disease

I Mikocziova, V Greiff, LM Sollid - Genes & Immunity, 2021 - nature.com
Immunoglobulins (Ig) play an important role in the immune system both when expressed as
antigen receptors on the cell surface of B cells and as antibodies secreted into extracellular …

[HTML][HTML] Mining adaptive immune receptor repertoires for biological and clinical information using machine learning

V Greiff, G Yaari, LG Cowell - Current Opinion in Systems Biology, 2020 - Elsevier
The adaptive immune system stores invaluable information about current and past immune
responses and may serve as an ultrasensitive biosensor. Given the immune system's critical …

IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data

A Peres, WD Lees, OL Rodriguez, NY Lee… - Nucleic Acids …, 2023 - academic.oup.com
In adaptive immune receptor repertoire analysis, determining the germline variable (V) allele
associated with each T-and B-cell receptor sequence is a crucial step. This process is highly …

Vaccine genetics of IGHV1-2 VRC01-class broadly neutralizing antibody precursor naïve human B cells

JH Lee, L Toy, JT Kos, Y Safonova, WR Schief… - NPJ vaccines, 2021 - nature.com
A successful HIV vaccine eliciting broadly neutralizing antibodies (bnAbs) must overcome
the hurdle of being able to activate naive precursor B cells encoding features within their …

AS03 adjuvant enhances the magnitude, persistence, and clonal breadth of memory B cell responses to a plant-based COVID-19 vaccine in humans

L Grigoryan, Y Feng, L Bellusci, L Lai, B Wali… - Science …, 2024 - science.org
Vaccine adjuvants increase the breadth of serum antibody responses, but whether this is
due to the generation of antigen-specific B cell clones with distinct specificities or the …

Diversity in immunogenomics: the value and the challenge

K Peng, Y Safonova, M Shugay, AB Popejoy… - Nature …, 2021 - nature.com
Immunogenomics studies have been largely limited to individuals of European ancestry,
restricting the ability to identify variation in human adaptive immune responses across …

A novel framework for characterizing genomic haplotype diversity in the human immunoglobulin heavy chain locus

OL Rodriguez, WS Gibson, T Parks, M Emery… - Frontiers in …, 2020 - frontiersin.org
An incomplete ascertainment of genetic variation within the highly polymorphic
immunoglobulin heavy chain locus (IGH) has hindered our ability to define genetic factors …

Characterization of the immunoglobulin lambda chain locus from diverse populations reveals extensive genetic variation

WS Gibson, OL Rodriguez, K Shields, CA Silver… - Genes & …, 2023 - nature.com
Immunoglobulins (IGs), crucial components of the adaptive immune system, are encoded by
three genomic loci. However, the complexity of the IG loci severely limits the effective use of …

Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping

M Gidoni, O Snir, A Peres, P Polak, I Lindeman… - Nature …, 2019 - nature.com
Abstract Analysis of antibody repertoires by high-throughput sequencing is of major
importance in understanding adaptive immune responses. Our knowledge of variations in …

[HTML][HTML] AIRR-C IG Reference Sets: curated sets of immunoglobulin heavy and light chain germline genes

AM Collins, M Ohlin, M Corcoran, JM Heather… - Frontiers in …, 2024 - frontiersin.org
Introduction Analysis of an individual's immunoglobulin (IG) gene repertoire requires the use
of high-quality germline gene reference sets. When sets only contain alleles supported by …