Pathological implication of protein post-translational modifications in cancer

S Pan, R Chen - Molecular aspects of medicine, 2022 - Elsevier
Protein post-translational modifications (PTMs) profoundly influence protein functions and
play crucial roles in essentially all cell biological processes. The diverse realm of PTMs and …

The 2022 report on the human proteome from the HUPO human proteome project

GS Omenn, L Lane, CM Overall, C Pineau… - Journal of proteome …, 2022 - ACS Publications
The 2022 Metrics of the Human Proteome from the HUPO Human Proteome Project (HPP)
show that protein expression has now been credibly detected (neXtProt PE1 level) for 18 …

Predicting endometrial cancer subtypes and molecular features from histopathology images using multi-resolution deep learning models

R Hong, W Liu, D DeLair, N Razavian, D Fenyö - Cell Reports Medicine, 2021 - cell.com
The determination of endometrial carcinoma histological subtypes, molecular subtypes, and
mutation status is critical for the diagnostic process, and directly affects patients' prognosis …

Proteogenomic analysis of cancer aneuploidy and normal tissues reveals divergent modes of gene regulation across cellular pathways

P Cheng, X Zhao, L Katsnelson… - Elife, 2022 - elifesciences.org
How cells control gene expression is a fundamental question. The relative contribution of
protein-level and RNA-level regulation to this process remains unclear. Here, we perform a …

Current perspectives on the role of matrix metalloproteinases in the pathogenesis of basal cell carcinoma

M Tampa, SR Georgescu, MI Mitran, CI Mitran, C Matei… - Biomolecules, 2021 - mdpi.com
Basal cell carcinoma (BCC) is the most common skin malignancy, which rarely metastasizes
but has a great ability to infiltrate and invade the surrounding tissues. One of the molecular …

High-throughput profiling of sequence recognition by tyrosine kinases and SH2 domains using bacterial peptide display

A Li, R Voleti, M Lee, D Gagoski, NH Shah - Elife, 2023 - elifesciences.org
Tyrosine kinases and SH2 (phosphotyrosine recognition) domains have binding specificities
that depend on the amino acid sequence surrounding the target (phospho) tyrosine residue …

[HTML][HTML] High expression of PTGES3 is an independent predictive poor prognostic biomarker and correlates with immune infiltrates in lung adenocarcinoma

P Gao, K Zou, L Xiao, H Zhou, X Xu, Z Zeng… - International …, 2022 - Elsevier
Background Immune-infiltration was positively relationship with overall survival in lung
adenocarcinoma (LUAD). Nevertheless, the potential clinical value of PTGES3, especially in …

Inferring kinase activity from phosphoproteomic data: tool comparison and recent applications

SR Piersma, A Valles‐Marti, F Rolfs… - Mass spectrometry …, 2024 - Wiley Online Library
Aberrant cellular signaling pathways are a hallmark of cancer and other diseases. One of
the most important signaling mechanisms involves protein phosphorylation …

Quantitative proteomics characterization of cancer biomarkers and treatment

XL Yang, Y Shi, DD Zhang, R Xin, J Deng… - Molecular Therapy …, 2021 - cell.com
Cancer accounted for 16% of all death worldwide in 2018. Significant progress has been
made in understanding tumor occurrence, progression, diagnosis, treatment, and prognosis …

Microdissection of cancer-associated fibroblast infiltration subtypes unveils the secreted SERPINE2 contributing to immunosuppressive microenvironment and …

D Zhang, R Sun, C Di, L Li, F Zhao, Y Han… - Computers in Biology …, 2023 - Elsevier
In the era of immunotherapy, the suboptimal response rate and the development of acquired
resistance among the initial beneficiaries continue to present significant challenges across …