Methods of liposomes preparation: formation and control factors of versatile nanocarriers for biomedical and nanomedicine application

D Lombardo, MA Kiselev - Pharmaceutics, 2022 - mdpi.com
Liposomes are nano-sized spherical vesicles composed of an aqueous core surrounded by
one (or more) phospholipid bilayer shells. Owing to their high biocompatibility, chemical …

Enhanced delivery of lipophilic bioactives using emulsions: a review of major factors affecting vitamin, nutraceutical, and lipid bioaccessibility

DJ McClements - Food & Function, 2018 - pubs.rsc.org
Many researchers are currently developing emulsion-based delivery systems to increase the
bioavailability of lipophilic bioactive agents, such as oil-soluble vitamins, nutraceuticals, and …

Lipid21: complex lipid membrane simulations with AMBER

CJ Dickson, RC Walker, IR Gould - Journal of chemical theory and …, 2022 - ACS Publications
We extend the modular AMBER lipid force field to include anionic lipids, polyunsaturated
fatty acid (PUFA) lipids, and sphingomyelin, allowing the simulation of realistic cell …

Spatial arrangement of proteins in planar and curved membranes by PPM 3.0

AL Lomize, SC Todd, ID Pogozheva - Protein Science, 2022 - Wiley Online Library
Cellular protrusions, invaginations, and many intracellular organelles have strongly curved
membrane regions. Transmembrane and peripheral membrane proteins that induce, sense …

CHARMM-GUI input generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM simulations using the CHARMM36 additive force field

J Lee, X Cheng, S Jo, AD MacKerell, JB Klauda, W Im - Biophysical journal, 2016 - cell.com
Proper treatment of nonbonded interactions is essential for the accuracy of molecular
dynamics (MD) simulations, especially in studies of lipid mono-and bilayers. The use of the …

Breakdown of the Nernst–Einstein relation in carbon nanotube porins

Z Li, RP Misra, Y Li, YC Yao, S Zhao, Y Zhang… - Nature …, 2023 - nature.com
For over 100 years, the Nernst–Einstein relation has linked a charged particle's
electrophoretic mobility and diffusion coefficient. Here we report experimental …

Lipid14: the amber lipid force field

CJ Dickson, BD Madej, ÅA Skjevik… - Journal of chemical …, 2014 - ACS Publications
The AMBER lipid force field has been updated to create Lipid14, allowing tensionless
simulation of a number of lipid types with the AMBER MD package. The modular nature of …

Giant coacervate vesicles as an integrated approach to cytomimetic modeling

Y Zhang, Y Chen, X Yang, X He, M Li… - Journal of the …, 2021 - ACS Publications
Although giant unilamellar vesicles (GUVs) have been extensively studied as synthetic cell-
like microcompartments, their applicability as cytomimetic models is severely compromised …

OPM database and PPM web server: resources for positioning of proteins in membranes

MA Lomize, ID Pogozheva, H Joo… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Orientations of Proteins in Membranes (OPM) database is a curated web
resource that provides spatial positions of membrane-bound peptides and proteins of known …

Going backward: a flexible geometric approach to reverse transformation from coarse grained to atomistic models

TA Wassenaar, K Pluhackova… - Journal of chemical …, 2014 - ACS Publications
The conversion of coarse-grained to atomistic models is an important step in obtaining
insight about atomistic scale processes from coarse-grained simulations. For this process …