Inbreeding and runs of homozygosity: A possible solution to an old problem

I Curik, M Ferenčaković, J Sölkner - Livestock science, 2014 - Elsevier
Quantifying human, plant and livestock inbreeding has been an important goal of
evolutionary biologists and agricultural scientists for nearly a century, and methods to do so …

Improving the estimation of realized effective population sizes in farm animals

JP Gutiérrez, I Cervantes… - Journal of Animal …, 2009 - Wiley Online Library
Computation of inbreeding rate (ΔF) must consider that inbreeding is delayed with one
generation with respect to the idealized population when addressed using individual …

Methods to estimate effective population size using pedigree data: Examples in dog, sheep, cattle and horse

G Leroy, T Mary-Huard, E Verrier, S Danvy… - Genetics Selection …, 2013 - Springer
Background Effective population sizes of 140 populations (including 60 dog breeds, 40
sheep breeds, 20 cattle breeds and 20 horse breeds) were computed using pedigree …

Estimation of effective population size from the rate of coancestry in pedigreed populations

I Cervantes, F Goyache, A Molina… - Journal of animal …, 2011 - Wiley Online Library
We introduce a simple method to estimate effective population size from increase in
coancestry (Δcjk) for all pairs of individuals j and k in a reference subpopulation. An increase …

Genetic diversity and population structure of six autochthonous pig breeds from Croatia, Serbia, and Slovenia

M Zorc, D Škorput, K Gvozdanović, P Margeta… - Genetics selection …, 2022 - Springer
Background The importance of local breeds as genetic reservoirs of valuable genetic
variation is well established. Pig breeding in Central and South-Eastern Europe has a long …

Extent of linkage disequilibrium and effective population size in Finnish Landrace and Finnish Yorkshire pig breeds

P Uimari, M Tapio - Journal of animal science, 2011 - academic.oup.com
The extent of linkage disequilibrium (LD) and effective population size in Finnish Landrace
and Finnish Yorkshire pig populations were studied using a whole genome SNP panel …

Application of individual increase in inbreeding to estimate realized effective sizes from real pedigrees

I Cervantes, F Goyache, A Molina… - Journal of Animal …, 2008 - Wiley Online Library
The objective of this study was to test the performance of a recently proposed methodology
for the estimation of realized effective size (Ne) based on individual increase in inbreeding …

[HTML][HTML] Assessment of accuracy of genomic prediction for French Lacaune dairy sheep

G Baloche, A Legarra, G Sallé, H Larroque… - Journal of Dairy …, 2014 - Elsevier
Genomic selection in Lacaune dairy sheep was investigated based on genotypes from the
OvineSNP50 BeadChip (Illumina Inc., San Diego, CA). Historical artificial insemination …

Identification of an elite core panel as a key breeding resource to accelerate the rate of genetic improvement for irrigated rice

RU Juma, J Bartholomé, P Thathapalli Prakash… - Rice, 2021 - Springer
Rice genetic improvement is a key component of achieving and maintaining food security in
Asia and Africa in the face of growing populations and climate change. In this effort, the …

[HTML][HTML] Population structure and inbreeding effects on growth traits of Santa Inês sheep in Brazil

VB Pedrosa, ML Santana Jr, PS Oliveira, JP Eler… - Small Ruminant …, 2010 - Elsevier
The aim of this study was to describe the population structure, inbreeding and to quantify
their effect for different weights, of Santa Inês sheep. For this reason, 6490 data of …