A survey of mangiferin and hydroxycinnamic acid ester accumulation in coffee (Coffea) leaves: biological implications and uses

C Campa, L Mondolot, A Rakotondravao… - Annals of …, 2012 - academic.oup.com
Background and Aims The phenolic composition of Coffea leaves has barely been studied,
and therefore this study conducts the first detailed survey, focusing on mangiferin and …

Complex evolutionary history of coffees revealed by full plastid genomes and 28,800 nuclear SNP analyses, with particular emphasis on Coffea canephora (Robusta …

JC Charr, A Garavito, C Guyeux, D Crouzillat… - Molecular Phylogenetics …, 2020 - Elsevier
For decades coffees were associated with the genus Coffea. In 2011, the closely related
genus Psilanthus was subsumed into Coffea. However, results obtained in 2017—based on …

Genetic structure and diversity of coffee (Coffea) across Africa and the Indian Ocean islands revealed using microsatellites

NJ Razafinarivo, R Guyot, AP Davis… - Annals of …, 2013 - academic.oup.com
Abstract Background and Aims The coffee genus (Coffea) comprises 124 species, and is
indigenous to the Old World Tropics. Due to its immense economic importance, Coffea has …

Transcriptional Activity, Chromosomal Distribution and Expression Effects of Transposable Elements in Coffea Genomes

FR Lopes, D Jjingo, CRM Da Silva, AC Andrade… - PLoS …, 2013 - journals.plos.org
Plant genomes are massively invaded by transposable elements (TEs), many of which are
located near host genes and can thus impact gene expression. In flowering plants, TE …

Development and application of SINE-based markers for genotyping of potato varieties

KM Seibt, T Wenke, C Wollrab, H Junghans… - Theoretical and applied …, 2012 - Springer
Potato variety discrimination based on morphological traits is laborious and influenced by
the environment, while currently applied molecular markers are either expensive or time …

Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades

R Guyot, F Lefebvre-Pautigny, C Tranchant-Dubreuil… - BMC genomics, 2012 - Springer
Abstract Background Coffee trees (Rubiaceae) and tomato (Solanaceae) belong to the
Asterid clade, while grapevine (Vitaceae) belongs to the Rosid clade. Coffee and tomato …

Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions

L Galindo-González, C Mhiri, MA Grandbastien… - BMC genomics, 2016 - Springer
Background Initial characterization of the flax genome showed that Ty1-copia
retrotransposons are abundant, with several members being recently inserted, and in close …

Genetic diversity of maize germplasm assessed by retrotransposon‐based markers

BC Kuhn, I López‐Ribera… - …, 2014 - Wiley Online Library
Maize is one of the most important crops and also a model for grass genome research.
Transposable elements comprise over 78% of the maize genome and their ability to …

Sequence data from new plastid and nuclear COSII regions resolves early diverging lineages in Coffea (Rubiaceae)

MD Nowak, AP Davis, AD Yoder - Systematic Botany, 2012 - ingentaconnect.com
Resolving phylogenetic relationships within the economically important genus Coffea
(Rubiaceae) has proven to be difficult due to low levels of plastid and nuclear ITS sequence …

High genetic diversity of in situ and ex situ populations of Madagascan coffee species: further implications for the management of coffee genetic resources

DN Andrianasolo, AP Davis, NJ Razafinarivo… - Tree genetics & …, 2013 - Springer
The genetic diversity of endemic Madagascan Coffea species has not received any
considerable attention, despite the high extinction threat facing most of the species on the …